MultiPus (for “MULTIple species for the synthetic Production of Useful biochemical Substances”) proposes an initial model and a method that enable to synthetically engineer a consortium for the production of compounds that are either exogenous to it, or are endogenous but where the interaction could be beneficial.
The model and its associated algorithm have been published in Scientific Reports, the paper is available here.
Download the Release 0.2.0
MultiPus Release 0.2.0 (2016-05-17)
This new release uses an ASP solver to speed up the resolution process. In the release are included the pre-processing and post-processing steps. After the post-processing step, the solutions can be visualised using Dinghy.
Download the Release 0.1.0
MultiPus Release 0.1.0 (2016-02-19)
Download the datasets
We applied the model to two cases of application as described in the paper. The related networks are available below. All were obtained from KEGG using MetExplore:
Contacts: Alice Julien-Laferrière and Marie-France Sagot.
