These are the main institutions with whom there are ongoing collaborations:
- Instituto de Matemática e Estatística, Universidade de São Paulo, São Paulo, Brazil.
- Instituto de Ciências Biomédicas, Departamento de Parasitologia, Universidade de São Paulo, São Paulo, Brazil.
- Departamento de Computação e Estatística, Universidade Federal de Mato Grosso do Sul, Campo Grande, Brazil.
- Laboratório Nacional de Computação Científica, Ministério da Ciência e da Tecnologia, Petrópolis, Rio de Janeiro, Brazil.
- Centro de Biotecnologia, Universidade Federal de Rio Grande do Sul, Porto Alegre, Brazil.
- Instituto de Biologia Molecular do Paraná – Fiocruz-PR, Curitiba, Paraná, Brazil.
- Center for Mathematical Modeling (CMM), University of Chile at Santiago, Chile.
- Center for Genomics and Bioinformatics, Universidad Mayor, Santiago, Chile.
- Instituto Superior Técnico Lisbon, Portugal.
- Fabien Jourdan from the INRA UMR1331 Toxalim at the Inra-Toulouse who is an expert on (mainly but not only) metabolic network reconstruction, analysis, and visualisation.
- Catherine Matias, LPMA, UMR CNRS 7599, University of Paris 6.
- Etienne Birmelé, MAP5, UMR CNRS 8145, University of Paris 5.
More recent collaborations that may develop further in the future include both biology- and computation/math-oriented groups.
The main non academic collaborators were:
- TecSinapse, Brazil.
- Chr. Hansen A/S, Copenhagen, Denmark.
- Maat Pharma, Lyon, France (just starting)
