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Students & Postdocs

Below appears the students and postdocs I (co-)advised over the years. The links where any exists should be up-to-date. If they are not, please, drop me a message (see Contact).

Current PhD students

Laura Urbini, co-advised with Catherine Matias

Leandro Ishi Soares de Lima, co-advised with Vincent Lacroix and Giuseppe Italiano

Henri Taneli Pusa, co-advised with Alberto Marchetti-Spaccamela

Current PhD students in co-supervision with another country

Mattia Gastaldello, co-advised with Tiziana Calamoneri, Sapienza University of Rome, Italy

André Veríssimo, co-advised with Susana Vinga, IDMEC, IST, Lisbon, Portugal

Current visiting PhD students supervised by others

Alex di Genova, visiting PhD student, advised by Alejandro Maass, CMM University of Chile, Santiago, and Eric Goles, University Adolfo Ibañez, Santiago, Chile

Current postdocs

Ricardo Andrade, co-advised with Roberto Marcondes Cesar Junior, USP, Brazil

Ex-PhDs, sandwich PhDs or postdocs

Nadia Pisanti, PhD defended in 2001, co-advised with Fabrizio Luccio, later came back as postdoc for 9 months, currently Associate Professor at the Department of Computer Science of the University of Pisa, Italy

Sébastien Provencher, postdoc for 2 years starting from 2001, currently high school teacher in Canada

Laurent Marsan, PhD defended in 2002, co-advised with Maxime Crochemore, currently Associate Professor at IUT Versailles

Estela Maris Rodrigues, PhD defended in 2003, co-advised with Yoshiko Wakabayashi, currently Associate Professor at Mackenzie University, São Paulo, Brazil

Philippe Blayo, PhD defended in 2003 at the Université de Marne-la-Vallée, co-advised with Maxima Crochemore

Julien Allali, PhD defended in 2004, co-advised with Maxime Crochemore, currently Associate Professor at the LABRI, University of Bordeaux

Raquel Tavares, postdoc for 2 years, currently Associate Professor at University Lyon 1

Susana Vinga, Lisbon, Portugal, PhD defended in 2005, advisor: Jonas de Almeida, currently Associate Professor at the INESC-IST, Lisbon

Jeane C. B. de Melo, PhD defended in 2005, co-advised with Kátia Guimarães, University of Pernambuco, Brazil, currently Associate Professor at the Federal Agricultural University of Recife

Said Sadique Adi, PhD defended in 2005, co-advised with Carlos Eduardo Ferreira, University of São Paulo, Brazil, currently Associate Professor at the Universidade Federal de Mato Grosso do Sul, Brazil

Pierre Peterlongo, PhD defended in 2006, co-advised with Maxime Crochemore and Nadia Pisanti, currently CR2 in the GenScale INRIA Project-Team, Rennes

Eric Tannier, postdoc for one year starting June 2003, currently CR1 in the Beagle INRIA Project-Team, Lyon

Patricia Thébault, postdoc for two years starting September 2005, currently Associate Professor at University of Bordeaux

Cinzia Pizzi, postdoc for one year until Dec. 2007, currently Associate Professor at Padova University, Italy

Vincent Lacroix, PhD defended in 2007, University of Lyon 1, CNRS BDI scholarship, was postdoc at Centre de Regulació Genòmica for 14 months before doing 9 months of postdoc back in the team; currently Associate Professor in Erable

Paulo Gustavo Fonseca, postdoc for one year after part of his PhD done in the team and defended in 2008, currently Associate Professor at INESC-ID, Instituto Superior Técnico, Lisbon

Claire Lemaitre, PhD defended in 2008, University of Lyon 1, co-advised with Christian Gautier, currently CR2 in the GenScale INRIA Project-Team, Rennes

Marc Deloger, PhD defended in 2009, University of Lyon 1, co-advised with Cristina Vieira, currently bioinformaticien at the Bioinformatics Platform of Gustave Roussy

Marília Dias Vieira Braga, PhD Defended in 2009, AlBan and University of Lyon I, co-advised with Eric Tannier, currenly Associate Researcher at the Genome Informatics group, Bielefeld University, Germany

Ludovic Cottret, PhD defended in 2009, University of Lyon 1, co-advised with Hubert Charles, INSA Lyon, currently IR INRA, Toulouse

Augusto Vellozo, postdoc for two years from 2008, currently Researcher at TecSinapse, Brazil

Amélie Véron, postdoc for two years from 2008, currently Project manager at Complex Systems Modeler at The CoSMo Company, Lyon

Igor Nor, postdoc for 2 years starting from 2008, currently Senior researcher at Hewlett-Packard Laboratories, Haifa, Israel

Nuno Mendes, PhD defended in 2011, IST at Lisbon-Portugal and University of Lyon I, co-advised with Ana Teresa Freitas, currently Software Engineer at Findmore Consulting, Portugal

Alexandra Carvalho, PhD defended in 2011, IST, Lisbon, Portugal, co-advised with Arlindo Oliveira, currently Associate Professor at Instituto de Telecomunicações, Instituto Superior Técnico (IST), Lisbon, Portugal

Vicente Acuña, PhD defended in 2010, then postdoc for 18 months, currently Scientist at the Center for Mathematical Modeling (CMM) at the University of Chile, Santiago, Chile

Alexandre Freire, USP, São Paulo, Brazil, PhD defended in Brazil, supervisor: Carlos Eduardo Ferreira, sandwich PhD CNPq scholarship, currently Associate Professor at USP-Leste

Patricia Simões, PhD defended in 2012, FCT, University of Lyon I, co-advised with Sylvain Charlat, currently Research Assistant, Hospices Civils de Lyon

Matteo Brilli, postdoc for 2 years from 2010, currently Researcher at Bio Computing Project (BiP), Italy

Lilia Brinza, postdoc for 8 months starting from 2012, currently Bioinformatics manager at MaaT Pharm, Lyon

Janice Kielbassa, postdoc for 2 years starting from, currently engineer at Centre de Recherche en Cancérologie Lyon, CRCL

Paulo Vieira Milreu, PhD defended in 2012, University of Lyon I, co-advised with Vincent Lacroix and Christian Gautier, currently Researcher at TecSinapse, Brazil

Gustavo Sacomoto, PhD defended in 2014, University of Lyon I, then postdoc for one year, co-advised with Pierluigi Crescenzi, University of Florence, Italy, and Vincent Lacroix, currently Researcher at Google Paris

Pierre-Antoine Rollat-Farnier, PhD defended in 2014, University of Lyon I, co-advised with Laurence Mouton and Fabrice Vavre, currently IR CHU Lyon

Cecília Klein, PhD defended in 2014, University of Lyon I, co-advised with Ana Tereza de Ribeiro Vasconcelos, currently postdoc at the CRG, Barcelona, Spain

Beatrice Donati, PhD defended in 2015, University of Lyon I, co-advised with Pierluigi Crescenzi, University of Florence, Italy

Blerina Sinaimeri, postdoc from 2012 to 2015, now Inria Junior Researcher in the Erable Team

Susan Higashi, PhD defended in 2014, University of Lyon I, co-advised with Christian Gautier and Stefano Colella, then postdoc in the team for one year, currently working for a private company on software development

Christian Baudet, visiting PhD student from University of Campinas, Brazil, and then postdoc from 2011 to 2014; currently engineer at Centre Léon Bérard, Lyon, France

Laurent Bulteau, postdoc from 2014 to 2015, now Junior Researcher at CNRS, University of Marne-la-Vallée, France

Delphine Parrot, postdoc from 2014 to 2016, now postdoc at GEOMAR Centre for Marine Biotechnology, Kiel, Germany

Mariana Galvão Ferrarini, PhD defended in December 2015, co-advised with Arnaldo Zaha, Federal University of Rio Grande do Sul, then postdoc in the team for 1 year

Martin Wannagat, PhD defended in July 2016, University of Lyon 1, co-advised with Leen Stougie and Alberto Marchetti-Spaccamela, then postdoc in the team for 3 months, now engineer for 2 years funded by Inria

Alice Julien Laferrière, PhD defended in December 2016, co-advised with Susana Vinga and Vincent Lacroix

Master students

Irene Ziska, Master student Free University of Berlin

Gregoire Beaudoire, Master student ENS Computer Science Department Lyon

Ex-students who remained in academia

Yoan Diekmann, pre-Master student, co-advised with Eric Tannier and Julien Allali; currently Research Associate at UCL, UK

Steffen Heyne, Erasmus student, co-advised with Julien Allali, currently postdoc at Max Planck Institute of Immunobiology and Epigenetics, Germany

Alexis Gambis, DEA University of Marne-la-Vallée defended in 2004, currently a filmmaker specialised in docu-fiction, New York, USA

Florence Cavalli, Master 2 University of Lyon 1, defended in 2006, co-advised with Cristina Vieira, currently postdoc at University of Toronto, Canada

Cyril Fournier, 4th year of BIM, Insa-Lyon, worked for 3 months in the team in 2013, currently looking again for an engineer position

Maria-Emilia Puig Lombardi, Master 1 of AgroParisTech, Paris, currently Research Engineer at Institut Curie, Paris

Hong Phong Pham, Master student ENS Lyon, defended in 2015, co-advised with Laurent Bulteau and Arnaud Mary, currently doing a PhD at the Université Paris-Sud

Ex-students (DESS/DEA/Master) who did not continue in academia

Gérald Balayssac, DEA

Stéphane Bizard, DEA

Laurent Canet, DEA, co-supervision with Maxime Crochemore and Julien Allali

Anne Cariou, 5th year École Vétérinaire Maison-Alfort

Frédéric Chataigner, DEA, co-supervision with Christian Choffrut

Sophie Créno, 5th year engineering school and DEA

Philippe Lamy, 4th year engineering school

Ludovic Le Botlan, 4th year engineering school

Sylvain Lhullier, DEA

Anne Marcel, DESS

Muriel Meites, DESS

Benoît Olivieri, DEA

Gregory Pageot, pre-Master student, University of Marne-la-Vallée, co-advised with Maxime Crochemore and Julien Allali

Cathy Philippe, DEA, co-supervision with Christine Gaspin and Thomas Faraut, INRA Toulouse

Eric Poiret, 4th year engineering school

Sébastien Wirth, 4th year university

Marina Zelwer, DEA

Juliet Ansel, Master

Permanent link to this article: https://team.inria.fr/erable/en/marie-france-sagot/phd-students-postdocs/