Author's posts
Permanent link to this article: https://team.inria.fr/genscale/paper-carnac-lr-published-in-nar-de-novo-clustering-of-long-reads-by-gene-from-transcriptomics-data/
Long Reads RNA-seq de novo clustering – preprint
De novo Clustering of Gene Expressed Variants in Transcriptomic Long Reads Data Sets Preprint: biorxiv.org/content/early/ Tool: https://github.com/kamimrcht/CARNAC
Permanent link to this article: https://team.inria.fr/genscale/long-reads-rna-seq-de-novo-clustering-preprint/
discoSnp goes to RAD seq
We propose an adaptation of DiscoSnp for RadSeq data. Paper: biorxiv.org/content/early/ Tool: github.com/GATB/DiscoSnp/ Novelties: Clustering per locus Predictions of variants close to sequence extremities Order(s) of magnitude faster than Stack or IPyRAD. Predictions have high precision (up to 99.3% on simulated data) with good recall (82.2% when using high precision parameters) Applied on real biological data, RAD …
Permanent link to this article: https://team.inria.fr/genscale/discosnp-goes-to-rad-seq/
Permanent link to this article: https://team.inria.fr/genscale/new-minimal-perfect-hash-library-bbhash/
New Short Read Connector Release
A new release (1.0.1) of the RConnector tool (connecting reads from large datasets) is available here.
Permanent link to this article: https://team.inria.fr/genscale/new-short-read-connector-release/
GATB Programming Day – Spring 2017
Are you interested in learning how to make high-performance software tools to decypher reads data? Are you a little familiar with C++ programming? Are you happy to come to Spain during Spring 2017? Ok, this event if fully made for you: The Genscale team will hold a GATB Special Session during the 5th International Work-Conference on …
Permanent link to this article: https://team.inria.fr/genscale/gatb-programming-day-spring-2017/
Slides from the colib’read workshop available
You may find all slides from the colib’read workshop on the program page.
Permanent link to this article: https://team.inria.fr/genscale/slides-from-the-colibread-workshop-available/
Phd subject proposal
We propose a PhD subject about read assembly and haplotyping. See dedicated page
Permanent link to this article: https://team.inria.fr/genscale/phd-subject-proposal/
Workshop Colib’Read – Program Online
Hi all, The Colib’read workshop program is now online on this page http://gdr-bim.cnrs.fr/colibread/program/. We remind you that the attendance is free but ***registration is mandatory*** see website: http://gdr-bim.cnrs.fr/colibread/. Note that space is limited, and registration will be taken in the order received. — WHAT — Calling biological information from raw reads and long reads correction. …
Permanent link to this article: https://team.inria.fr/genscale/workshop-colibread-program-online/
Short Read Connector presentation
Short Read Connector was published and presented during the Prague Stringology Conference 2016. Slides available from Pierre’s presentation page.
Permanent link to this article: https://team.inria.fr/genscale/short-read-connector-presentation/