Author's posts
Paper CARNAC-LR published in NAR: “De novo clustering of long reads by gene from transcriptomics data”
Our paper “De novo clustering of long reads by gene from transcriptomics data” was published late October 2018 in NAR. It describes the CARNAC-LR tool developed by Camille Marchet
Permanent link to this article: https://team.inria.fr/genscale/paper-carnac-lr-published-in-nar-de-novo-clustering-of-long-reads-by-gene-from-transcriptomics-data/
Permanent link to this article: https://team.inria.fr/genscale/long-reads-rna-seq-de-novo-clustering-preprint/
discoSnp goes to RAD seq
We propose an adaptation of DiscoSnp for RadSeq data. Paper: biorxiv.org/content/early/ Tool: github.com/GATB/DiscoSnp/ Novelties: Clustering per locus Predictions of variants close to sequence extremities Order(s) of magnitude faster than Stack or IPyRAD. Predictions have high precision (up to 99.3% on simulated data) with good recall (82.2% when using high precision parameters) Applied on real biological data, RAD …
Permanent link to this article: https://team.inria.fr/genscale/discosnp-goes-to-rad-seq/
NEW minimal perfect hash library BBHASH
A preprint for our minimal perfect hash library BBHash (formerly BooPHF) is up on arxiv (http://arxiv.org/abs/1702.03154 ). http://github.com/rizkg/BBHash
Permanent link to this article: https://team.inria.fr/genscale/new-minimal-perfect-hash-library-bbhash/
Permanent link to this article: https://team.inria.fr/genscale/new-short-read-connector-release/
GATB Programming Day – Spring 2017
Are you interested in learning how to make high-performance software tools to decypher reads data? Are you a little familiar with C++ programming? Are you happy to come to Spain during Spring 2017? Ok, this event if fully made for you: The Genscale team will hold a GATB Special Session during the 5th International Work-Conference on …
Permanent link to this article: https://team.inria.fr/genscale/gatb-programming-day-spring-2017/
Permanent link to this article: https://team.inria.fr/genscale/slides-from-the-colibread-workshop-available/
Permanent link to this article: https://team.inria.fr/genscale/phd-subject-proposal/
Workshop Colib’Read – Program Online
Hi all, The Colib’read workshop program is now online on this page http://gdr-bim.cnrs.fr/colibread/program/. We remind you that the attendance is free but ***registration is mandatory*** see website: http://gdr-bim.cnrs.fr/colibread/. Note that space is limited, and registration will be taken in the order received. — WHAT — Calling biological information from raw reads and long reads correction. …
Permanent link to this article: https://team.inria.fr/genscale/workshop-colibread-program-online/
Permanent link to this article: https://team.inria.fr/genscale/short-read-connector-presentation/
