Team presentation

GenScale is a bioinformatics research team. Its main goal is to develop scalable methods, tools, and software for
processing genomic data. Our research is motivated by the fast development of next-generation sequencing (NGS) and third generation (TGS) technologies that provide very challenging problems both in terms of bioinformatics and computer sciences.

GenScale research is organized along four main axes:

  • Data structures
    • Indexing the mass of genomic data
    • Focus on the de-Bruijn graph structure.
    • Provide end-user and optimized library
  • Algorithms
    • Optimized (time and memory) tools dedicated to NGS processing
    • Data compression, genome assembly, variant detection, metagenomics, GWAS (genome-wide association Study)
  • Parallelism
    • Combine several levels of parallelism
    • Use existing techniques as multithreading or MapReduce
    • Constrained algorithmic development, in particular, targeting hardware accelerators
  • Applications
    • Participate in biology-oriented projects
    • Inra, CEA, National Museum, Hospitals, …

 

GenScale – June 2019 – pre-covid time

Members

Academic and research staff

Visiting scientists and postdoctoral fellows

Visitors

Former members

Administrative assistant

  • Marie Le Roïc

PhD students

Engineers

  • Olivier Boulle, dnarXiv project
  • Anne Guichard, Enginner, Inra, ITN IGNITE European project

2021 Internship Students

  • Sandra Romain, M2 Bio-info, Rennes
  • Grégoire Prunier, M2 Bio-info, Rennes
  • Roland Faure, M2 Bioinformatique et modélisation, Paris VI
  • Rania Ouazahrou, M2 Bio-info, Rennes
  • Pauline Hamon, M2 Bio-Info, Rennes
  • Igor Martayan

 

 

GenScale – June 2018

 

GenScale2017

GenScale – June 2017

 

GenScale2016

GenScale – June 2016

 

GenScale2015

GenScale – June 2015

 

GenScale - June 2014

GenScale – June 2014

GenScale - June 2012

GenScale – June 2012

 

 

Permanent link to this article: https://team.inria.fr/genscale/