Author's posts
International Collaboration : Associate Team with LANL, NM, USA
Through the INRIA Associate Team Program, GenScale and Los Alamos National Laboratory, New Mexico, USA, join their effort on the following research project: High-Performance Combinatorial Optimization for Computational Genomics Description of the research program
Permanent link to this article: https://team.inria.fr/genscale/international-collaboration-associated-team-with-lanl/
Un outil d’analyse génomique pour le diagnostic cancer
Développée par l’équipe de recherche GenScale, au centre Inria Rennes – Bretagne Atlantique, GATB est une boîte à outils pour l’analyse des données issues des séquenceurs génomiques de nouvelle génération. Elle comprend aujourd’hui une douzaine de logiciels spécialisés dans différentes tâches de bio-informatique. Les chercheurs prévoient d’y intégrer une nouvelle application destinée à faciliter le …
Permanent link to this article: https://team.inria.fr/genscale/un-outil-danalyse-genomique-pour-le-diagnostic-cancer/
Seeking Bioinformatics Engineer – 18 months
Key words : Assembly, NGS data, GATB, Algorithms See the proposal on Irisa web site
Permanent link to this article: https://team.inria.fr/genscale/seeking-bioinformatics-engineer-18-months/
JOBIM’2013: Best poster award to G. Collet, G Rizk, R Chikhi and D Lavenier
Guillaume Collet, Guillaume Rizk, Rayan Chikhi and Dominique Lavenier won the best poster award at JOBIM’2013 for their poster “MINIA on a Raspberry Pi: Assembling a 100 Mbp Genome on a Credit Card Sized Computer”
Permanent link to this article: https://team.inria.fr/genscale/jobim2013-best-poster-award-to-g-collet-g-rizk-r-chikhi-and-d-lavenier/
CFP: Workshop on Distance Geometry and Applications
June 24-17, Manaus-Amazonas-BRAZIL http://dga2013.icomp.ufam.edu.br
Permanent link to this article: https://team.inria.fr/genscale/cfp-workshop-on-distance-geometry-and-applications/
Distance Geometry book edited by A. Mucherino
A new book entitled “Distance Geometry” edited by Antonio Mucherino, Assistant Professor and member of GenScale, is now available. Springer web site: link
Permanent link to this article: https://team.inria.fr/genscale/distance-geometry-book-edited-by-a-mucherino/
Minia selected as the best assembly algorithm in 2012
The Homologus blog reports the Top Bioinformatics Contributions of 2012. Minia, a new assembly algorithm, developed by R. Chikhi and G. Rizk, is ranked at the first position. Homologus web site: http://www.homolog.us/blogs/2013/01/10/top-bioinformatics-contributions-of-2012/ Minia web site: http://minia.genouest.org/
Permanent link to this article: https://team.inria.fr/genscale/minia-selected-as-the-best-assembly-algorithm-in-2012/
Korilog & GenScale
Korilog entre dans le pool des fournisseurs mondiaux de logiciels de génomique Article dans Biotech Finances : (PDF)
Permanent link to this article: https://team.inria.fr/genscale/korilog-genscale/
Korilog and Inria announce collaboration on significant acceleration of BLAST
Questembert, France, June 15th, 2012 – Korilog and GenScale/Inria today announced the integration of the PLAST technology into Korilog software platforms. Licensed by Korilog from GenScale/Inria, PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of the Blast suite of algorithms. See Korilog Web Site
Permanent link to this article: https://team.inria.fr/genscale/korilog-and-inria-announce-collaboration-on-significant-acceleration-of-blast/
Pr. Andonov awarded with the 20 most cited article (2007-2012) in Discrete Optimization Journal
Pr. R. Andonov, member of the GenScale team, is the author of one of the 20 most cited article 2007-2012 published in the Discrete Optimization journal with the following article: V. Pourriez, N. Yanec, and R. Andonov, A hybrid algorithm for the unbounded knapsack problem Discrete Optimization, Volume 6, Issue 1, 2009 See the diploma
Permanent link to this article: https://team.inria.fr/genscale/most-cited-article-2007-2012/
Inria
IRISA