Anima and anima-scripts
SHANOIR Software: a software package to share neuroimaging data
Empenn is taking part in the Inria development action around medInria. We are developing medInria, a software platform aimed at providing research clinicians with medical image analysis tools coming from research. This software will progressively include developments coming from the 4 major teams in medical image analysis at Inria: Asclepios, Athena, Parietal and VisAGeS, making it a future major diffusion platform for our research developments. More details on the medInria website.
Based on MATLAB and the SPM8 toolbox, autoMRI provides complete pipelines to pre-process and analyze various types of images (anatomical, functional, perfusion, metabolic, relaxometry, vascular). A new version of the ASL post-processing part was developed in Python and Nipype, therefore not requiring the disponibility of Matlab licences.