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Title: Topics in Mass Spectrometry Based Structural Determination.

Key words

protein assembly, reconstruction, mass spectrometry, tandem affinity purification, contact inference; fuzzy models, optimization.


1. Stoichiometry Determination for Mass-Spectrometry Data: the Interval Case; Agarwal, Deepesh and Cazals, Frederic and Malod-Dognin, Noel;  INRIA Technical Report 2013.

2. Unveiling contacts within macromolecular assemblies by solving Minimum Weight Connectivity Inference problems, Molecular and Cellular Proteomics, 2015. (pdf)


1. D. Agarwal, J. Araujo, C. Caillouet, F. Cazals, D. Coudert, and S. Perennes. Connectivity inference in mass spectrometry based structure determination . In European Symposium on Algorithms (ESA), Sophia-Antipolis, France, 2013.

Invited talks

1. Stoichiometry Determination for Mass-spectrometry Data in Structural Proteomics, Meeting of the French Biophysical Society, Grenoble, France, 2012.

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