Return to Team members

Former Members

Research Scientists

Neva DURAND

  • What: Invited Researcher
  • When: Sept 2016-July 2017
  • Now: Associate Researcher – Baylor College of Medicine

Julie Bernauer

  • What: Assistant researcher
  • When: 2007-2009
  • Now: research scientist with the INRIA AMIB group, INRIA Saclay

PhD students

Romain Tetley

  • Topic: Modeling Large Protein Assemblies using Structural Homology
  • When: 2014-2018

Simon Marillet

  • Topic: Modeling Immunoglobulin – antigen complexes
  • When: 2013-2016
  • Now: Ingénieur de recherche – CHU de Poitiers

Christine Roth

  • Topic: Etude de corrélations dans l’espace des conformations macro-moléculaires
  • When: 2010-interrupted

Alix Lhéritier

  • Topic: Scoring and discriminating in high-dimensional spaces: a geometric based approach of statistical tests
  • When: 2011-2015
  • Now: with Amadeus

Deepesh Agarwal

  • Topic: Towards nano-molecular design : advanced algorithms for modeling large protein assemblies
  • When: 2011-2015

Sébastien Loriot

  • Topic: Arrangements of circles on a sphere: algorithms and applications to molecular models represented by union of balls
  • When: 2005-2008.
  • Now: with the Geometry Factory

Post-docs

Rémy Watrigant

  • When: Nov 2016-Sept 2017
  • Now: Assistant Professor – Université Claude Bernard Lyon 1

Noel Malod-Dognin

  • When: 2010-2012
  • Now: Post-doc at Imperial College, London (group of N. Przulj)

Benjamin Bouvier

  • When: 2006-2008
  • Now: Research scientist with Institute of Biology and Chemistry of Proteins, Lyon

Summer Interns

Darsh Shah

  • Summer Intern from ITT Bombay – May-July 2014, under the supervision of F. Cazals.

Pararth Shah

  • Summer Intern from IIT Bombay – May-July 2011, under the supervision of F. Cazals.
  • Topic: Constructing The 3D Morse Diagram of a Sampled Function.

Venkata Duvvuru

  • Summer Intern from IIT Bombay – May-July 2011, under the supervision of N. Malod-Dognin.
  • Topic: Heuristic Strategies for Maximum Weighted Cliques.

Achin Bansal

  • Summer Intern from IIT Bombay – May-July 2010, under the supervision of F. Cazals.
  • Topic: Modeling protein binding patches.

Palak Dalal

  • Summer Intern from IIT Bombay – May-July 2010, under the supervision of F. Cazals.
  • Topic: Geometric optimization problems for collections of balls.

Harshad Kanhere

Nisarg Shah

  • Summer Intern from IIT Bombay – May-July 2009, under the supervision of F. Cazals.
  • Topic: Geometric optimization problems for collections of balls.

Nicolas Bonifas

  • Summer Intern from Ecole Normale Supérieure de Lyon – from 2nd June to 11th July 2008, under the supervision of F. Cazals.
  • Topic: Comparing protein – protein interfaces.

Sushant Sachdeva

  • Summer Intern from from IIT Bombay – May-July 2007, under the supervision of F. Cazals.

Master Students

 

Timothée O’Donnell

  • Master Student from Univ. Paris Sud Orsay – March-August 2018
  • Topic: Etudes structurales de dimères de FMRP et applications au syndrome X fragile

Ha Nguyen

  • Master Student from ENS Lyon – June-August 2018, under the supervision of Dorian Mazauric.
  • Topic: Graph Algorithms for low-resolution model of large protein assemblies

Louis Becquey

  • Summer Intern from INSA Lyon – May-August 2017, under the supervision of F. Cazals.
  • Topic: Algorithmic differentiation of C/C++ force fields used in biophysics

Romain Tetley

  • Master Student from Université de Nice Sophia-Antipolis – from 1st March to 14th August 2014
  • Topic: Homologie structurale, code en C++, Algorithmique, Protéines et interfaces, Virologie

Muhammad Ammad Ud Din

  • Master Student from Université de Nice Sophia-Antipolis – from 1st March to 31st August 2010, under the supervision of F. Cazals.
  • Topic: Modeling antibody / antigen binding patches.

Emilie Pihan

  • Master Student from Université de Nice Sophia-Antipolis – from 15th February to 15th August 2009; under the supervision of J. Bernauer and Dominique Douguet (CNRS / IPMC Sophia-Antipolis).
  • Topic: Study of surface methods to identify similarities between ligands.

Ludovic Di Beneditto

  • Master Student from Univ. of Montpellier – from 1st March to 31st August 2009, under the supervision of J. Bernauer.
  • Topic: Development of scoring functions for protein-nucleic acid docking.