2018
Journal articles
- titre
- Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure
- auteur
- Olivier Commowick, Audrey Istace, Michael Kain, Baptiste Laurent, Florent Leray, Mathieu Simon, Sorina Camarasu-Pop, Pascal Girard, Roxana Ameli, Jean-Christophe Ferré, Anne Kerbrat, Thomas Tourdias, Frédéric Cervenansky, Tristan Glatard, Jeremy Beaumont, Senan Doyle, Florence Forbes, Jesse Knight, April Khademi, Amirreza Mahbod, Chunliang Wang, Richard Mckinley, Franca Wagner, John Muschelli, Elizabeth Sweeney, Eloy Roura, Xavier Lladó, Michel Santos, Wellington Santos, Abel Silva-Filho, Xavier Tomas-Fernandez, Hélène Urien, Isabelle Bloch, Sergi Valverde, Mariano Cabezas, Francisco Vera-Olmos, Norberto Malpica, Charles Guttmann, Sandra Vukusic, Gilles Edan, Michel Dojat, Martin Styner, Simon Warfield, François Cotton, Christian Barillot
- article
- Scientific Reports, Nature Publishing Group, 2018, 8, pp.13650. ⟨10.1038/s41598-018-31911-7⟩
- DOI
- DOI : 10.1038/s41598-018-31911-7
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Conference papers
- titre
- Identification of Gadolinium contrast enhanced regions in MS lesions using brain tissue microstructure information obtained from diffusion and T2 relaxometry MRI
- auteur
- Sudhanya Chatterjee, Olivier Commowick, Onur Afacan, Simon Warfield, Christian Barillot
- article
- 21st International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2018), Sep 2018, Grenade, Spain. pp.63-71, ⟨10.1007/978-3-030-00931-1_8⟩
- DOI
- DOI : 10.1007/978-3-030-00931-1_8
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- titre
- A Bayes Hilbert Space for Compartment Model Computing in Diffusion MRI
- auteur
- Aymeric Stamm, Olivier Commowick, Alessandra Menafoglio, Simon Warfield
- article
- MICCAI 2018 – International Conference on Medical Image Computing and Computer-Assisted Intervention, Sep 2018, Grenade, Spain. pp.72-80, ⟨10.1007/978-3-030-00931-1_9⟩
- DOI
- DOI : 10.1007/978-3-030-00931-1_9
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- titre
- A 3-year follow-up study of enhancing and non-enhancing multiple sclerosis (MS) lesions in MS patients demonstrating clinically isolated syndrome (CIS) using a multi-compartment T2 relaxometry (MCT2) model
- auteur
- Sudhanya Chatterjee, Olivier Commowick, Onur Afacan, Benoît Combès, Anne Kerbrat, Simon Warfield, Christian Barillot
- article
- ISMRM Annual Meeting 2018, Jun 2018, Paris, France. pp.1-5
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- titre
- Multi-Compartment Model of Brain Tissues from T2 Relaxometry MRI Using Gamma Distribution
- auteur
- Sudhanya Chatterjee, Olivier Commowick, Onur Afacan, Simon K Warfield, Christian Barillot
- article
- ISBI 2018 – IEEE International Symposium on Biomedical Imaging, Apr 2018, Washington DC, United States. pp.141-144, ⟨10.1109/ISBI.2018.8363541⟩
- DOI
- DOI : 10.1109/ISBI.2018.8363541
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Preprints, Working Papers, …
- titre
- A three year follow-up study of gadolinium enhanced and non-enhanced regions in multiple sclerosis lesions using a multi-compartment T2 relaxometry model.
- auteur
- Sudhanya Chatterjee, Olivier Commowick, Onur Afacan, Benoît Combès, Simon Warfield, Christian Barillot
- article
- 2018
- DOI
- DOI : 10.1101/365379
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2017
Journal articles
- titre
- Longitudinal multiple sclerosis lesion segmentation: Resource and challenge
- auteur
- Aaron Carass, Snehashis Roy, Amod Jog, Jennifer L. Cuzzocreo, Elizabeth Magrath, Adrian Gherman, Julia Button, James Nguyen, Ferran Prados, Carole Sudre, Manuel Jorge Cardoso, Niamh Cawley, Olga Ciccarelli, Claudia Wheeler-Kingshott, Sébastien Ourselin, Laurence Catanese, Hrishikesh Deshpande, Pierre Maurel, Olivier Commowick, Christian Barillot, Xavier Tomas-Fernandez, Simon Warfield, Suthirth Vaidya, Abhijith Chunduru, Ramanathan Muthuganapathy, Ganapathy Krishnamurthi, Andrew Jesson, Tal Arbel, Oskar Maier, Heinz Handels, Leonardo Iheme, Devrim Unay, Saurabh Jain, Diana Sima, Dirk Smeets, Mohsen Ghafoorian, Bram Platel, Ariel Birenbaum, Hayit Greenspan, Pierre-Louis Bazin, Peter Calabresi, Ciprian Crainiceanu, Lotta Ellingsen, Daniel Reich, Jerry Prince, Dzung Pham
- article
- NeuroImage, Elsevier, 2017, 148, pp.77 – 102. ⟨10.1016/j.neuroimage.2016.12.064⟩
- DOI
- DOI : 10.1016/j.neuroimage.2016.12.064
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- titre
- Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions
- auteur
- Renaud Hedouin, Olivier Commowick, Elise Bannier, Benoit Scherrer, Maxime Taquet, Simon K. Warfield, Christian Barillot
- article
- IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2017, 36 (5), pp.1106 – 1115. ⟨10.1109/TMI.2016.2646920⟩
- DOI
- DOI : 10.1109/TMI.2016.2646920
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Conference papers
- titre
- Multi-Compartment T2 Relaxometry Model Using Gamma Distribution Representations: A Framework for Quantitative Estimation of Brain Tissue Microstructures
- auteur
- Sudhanya Chatterjee, Olivier Commowick, Simon K. Warfield, Christian Barillot
- article
- ISMRM 25TH ANNUAL MEETING & EXHIBITION, Apr 2017, Honolulu, Hawaii, USA, United States
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- titre
- Gaining Insights Into Multiple Sclerosis Lesion Characteristics from Brain Tissue Microstructure Information: A Multi-Compartment T2 Relaxometry Approach
- auteur
- Sudhanya Chatterjee, Olivier Commowick, Simon Warfield, Christian Barillot
- article
- ISMRM 25TH ANNUAL MEETING & EXHIBITION, Apr 2017, Honolulu, Hawaii, USA, United States
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2016
Conference papers
- titre
- Comprehensive Maximum Likelihood Estimation of Diffusion Compartment Models Towards Reliable Mapping of Brain Microstructure
- auteur
- Aymeric Stamm, Olivier Commowick, Simon Warfield, Simone Vantini
- article
- 19th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Oct 2016, Athens, Greece. pp.622 – 630, ⟨10.1007/978-3-319-46726-9_72⟩
- DOI
- DOI : 10.1007/978-3-319-46726-9_72
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- titre
- Maximum Likelihood Estimators of Brain White Matter Microstructure
- auteur
- Olivier Commowick, Aymeric Stamm, Simone Vantini, Simon Warfield
- article
- 48th Scientific Meeting of the Italian Statistical Society, Jun 2016, Salerno, Italy
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2015
Conference papers
- titre
- Symmetric Block-Matching Registration for the Distortion Correction of Echo-Planar Images
- auteur
- Renaud Hedouin, Olivier Commowick, Maxime Taquet, Elise Bannier, Benoit Scherrer, Simon Warfield, Christian Barillot
- article
- IEEE International Symposium on Biomedical Imaging (ISBI), Apr 2015, New York, United States. pp.717-720
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2014
Journal articles
- titre
- A Mathematical Framework for the Registration and Analysis of Multi-Fascicle Models for Population Studies of the Brain Microstructure
- auteur
- Maxime Taquet, Benoit Scherrer, Olivier Commowick, Jurriaan Peters, Mustafa Sahin, Benoît Macq, Simon K. Warfield
- article
- IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2014, 33 (2), pp.504-517. ⟨10.1109/TMI.2013.2289381⟩
- DOI
- DOI : 10.1109/TMI.2013.2289381
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Conference papers
- titre
- Tracking the Cortico-Spinal Tract as a Multi-Modal Distribution of Streamlines from Local White Matter Microstructure Models
- auteur
- Aymeric Stamm, Olivier Commowick, Xavier Tomas-Fernandez, Jolene Singh, Simon K. Warfield
- article
- MICCAI Challenge on DTI Tractography Proceedings, Sep 2014, Boston, United States. pp.21-32
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- titre
- Non-central chi estimation of multi-compartment models improves model selection by reducing overfitting
- auteur
- Aymeric Stamm, Benoit Scherrer, Stefano Baraldo, Olivier Commowick, Simon K. Warfield
- article
- ISMRM, May 2014, Milan, Italy. pp.2623
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- titre
- Fast and robust detection of the optimal number of fascicles in diffusion images using model averaging theory
- auteur
- Aymeric Stamm, Benoit Scherrer, Olivier Commowick, Christian Barillot, Simon K. Warfield
- article
- ISMRM, May 2014, Milan, Italy. pp.2629
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2012
Journal articles
- titre
- Estimating A Reference Standard Segmentation with Spatially Varying Performance Parameters: Local MAP STAPLE
- auteur
- Olivier Commowick, Alireza Akhondi-Asl, Simon Warfield
- article
- IEEE Transactions on Medical Imaging, Institute of Electrical and Electronics Engineers, 2012, 31 (8), pp.1593-1606. ⟨10.1109/TMI.2012.2197406⟩
- DOI
- DOI : 10.1109/TMI.2012.2197406
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- titre
- Automated delineation of white matter fiber tracts with a multiple region-of-interest approach.
- auteur
- Ralph Suarez, Olivier Commowick, Sanjay Prabhu, Simon K. Warfield
- article
- NeuroImage, Elsevier, 2012, 59 (4), pp.3690-3700. ⟨10.1016/j.neuroimage.2011.11.043⟩
- DOI
- DOI : 10.1016/j.neuroimage.2011.11.043
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Conference papers
- titre
- Registration and Analysis of White Matter Group Differences with a Multi-Fiber Model
- auteur
- Maxime Taquet, Benoit Scherrer, Olivier Commowick, Jurriaan Peters, Mustafa Sahin, Benoît Macq, Simon Warfield
- article
- 15th International Conference on Medical Image Computing and Computer Assisted Intervention, Oct 2012, Nice, France. pp.313-320
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