Publications

Publications HAL de Warfield du labo/EPI visages

2018

Journal articles

titre
Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure
auteur
Olivier Commowick, Audrey Istace, Michael Kain, Baptiste Laurent, Florent Leray, Mathieu Simon, Sorina Camarasu Pop, Pascal Girard, Roxana Ameli, Jean-Christophe Ferré, Anne Kerbrat, Thomas Tourdias, Frédéric Cervenansky, Tristan Glatard, Jeremy Beaumont, Senan Doyle, Florence Forbes, Jesse Knight, April Khademi, Amirreza Mahbod, Chunliang Wang, Richard Mckinley, Franca Wagner, John Muschelli, Elizabeth Sweeney, Eloy Roura, Xavier Llado, Michel Santos, Wellington P Santos, Abel G Silva-Filho, Xavier Tomas-Fernandez, Hélène Urien, Isabelle Bloch, Sergi Valverde, Mariano Cabezas, Francisco Javier Vera-Olmos, Norberto Malpica, Charles R G Guttmann, Sandra Vukusic, Gilles Edan, Michel Dojat, Martin Styner, Simon K. Warfield, François Cotton, Christian Barillot
article
Scientific Reports, 2018, 8 (1), pp.13650. ⟨10.1038/s41598-018-31911-7⟩
DOI
DOI : 10.1038/s41598-018-31911-7
Accès au texte intégral et bibtex
https://inserm.hal.science/inserm-01847873/file/s41598-018-31911-7.pdf BibTex

Conference papers

titre
A Bayes Hilbert Space for Compartment Model Computing in Diffusion MRI
auteur
Aymeric Stamm, Olivier Commowick, Alessandra Menafoglio, Simon K Warfield
article
MICCAI 2018 – International Conference on Medical Image Computing and Computer-Assisted Intervention, Sep 2018, Grenade, Spain. pp.72-80, ⟨10.1007/978-3-030-00931-1_9⟩
DOI
DOI : 10.1007/978-3-030-00931-1_9
Accès au texte intégral et bibtex
https://inserm.hal.science/inserm-01937992/file/MICCAI2018.pdf BibTex
titre
Identification of Gadolinium contrast enhanced regions in MS lesions using brain tissue microstructure information obtained from diffusion and T2 relaxometry MRI
auteur
Sudhanya Chatterjee, Olivier Commowick, Onur Afacan, Simon K Warfield, Christian Barillot
article
21st International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2018), Sep 2018, Grenade, Spain. pp.63-71, ⟨10.1007/978-3-030-00931-1_8⟩
DOI
DOI : 10.1007/978-3-030-00931-1_8
Accès au texte intégral et bibtex
https://hal.science/hal-01830532/file/MICAAI_2018_Camera_Ready.pdf BibTex
titre
A 3-year follow-up study of enhancing and non-enhancing multiple sclerosis (MS) lesions in MS patients demonstrating clinically isolated syndrome (CIS) using a multi-compartment T2 relaxometry (MCT2) model
auteur
Sudhanya Chatterjee, Olivier Commowick, Onur Afacan, Benoît Combès, Anne Kerbrat, Simon K Warfield, Christian Barillot
article
ISMRM Annual Meeting 2018, Jun 2018, Paris, France. pp.1-5
Accès au texte intégral et bibtex
https://hal.science/hal-01821694/file/HAL_copy_ISMRM_2018-MS-CIS-3yr-followup-study-MCT2.pdf BibTex
titre
Multi-Compartment Model of Brain Tissues from T2 Relaxometry MRI Using Gamma Distribution
auteur
Sudhanya Chatterjee, Olivier Commowick, Onur Afacan, Simon K Warfield, Christian Barillot
article
ISBI 2018 – IEEE International Symposium on Biomedical Imaging, Apr 2018, Washington DC, United States. pp.141-144, ⟨10.1109/ISBI.2018.8363541⟩
DOI
DOI : 10.1109/ISBI.2018.8363541
Accès au texte intégral et bibtex
https://hal.science/hal-01744852/file/Template_ISBI2018-copy.pdf BibTex

Preprints, Working Papers, …

titre
A three year follow-up study of gadolinium enhanced and non-enhanced regions in multiple sclerosis lesions using a multi-compartment T2 relaxometry model.
auteur
Sudhanya Chatterjee, Olivier Commowick, Onur Afacan, Benoît Combès, Simon K. Warfield, Christian Barillot
article
2018
DOI
DOI : 10.1101/365379
Accès au texte intégral et bibtex
https://hal.science/hal-01837974/file/bioArxiv_preprint_three_year_follow_up_study.pdf BibTex

2017

Journal articles

titre
Longitudinal multiple sclerosis lesion segmentation: Resource and challenge
auteur
Aaron Carass, Snehashis Roy, Amod Jog, Jennifer L. Cuzzocreo, Elizabeth Magrath, Adrian Gherman, Julia Button, James Nguyen, Ferran Prados, Carole H. Sudre, Manuel Jorge Cardoso, Niamh Cawley, Olga Ciccarelli, Claudia A.M. Wheeler-Kingshott, Sébastien Ourselin, Laurence Catanese, Hrishikesh Deshpande, Pierre Maurel, Olivier Commowick, Christian Barillot, Xavier Tomas-Fernandez, Simon K. Warfield, Suthirth Vaidya, Abhijith Chunduru, Ramanathan Muthuganapathy, Ganapathy Krishnamurthi, Andrew Jesson, Tal Arbel, Oskar Maier, Heinz Handels, Leonardo O. Iheme, Devrim Unay, Saurabh Jain, Diana M. Sima, Dirk Smeets, Mohsen Ghafoorian, Bram Platel, Ariel Birenbaum, Hayit Greenspan, Pierre-Louis Bazin, Peter A. Calabresi, Ciprian M. Crainiceanu, Lotta M. Ellingsen, Daniel S. Reich, Jerry L. Prince, Dzung L. Pham
article
NeuroImage, 2017, 148, pp.77 – 102. ⟨10.1016/j.neuroimage.2016.12.064⟩
DOI
DOI : 10.1016/j.neuroimage.2016.12.064
Accès au texte intégral et bibtex
https://inserm.hal.science/inserm-01480156/file/2017-NI-Carass-Challenge-2016_Dec_22.pdf BibTex
titre
Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions
auteur
Renaud Hédouin, Olivier Commowick, Elise Bannier, Benoit Scherrer, Maxime Taquet, Simon K. Warfield, Christian Barillot
article
IEEE Transactions on Medical Imaging, 2017, 36 (5), pp.1106 – 1115. ⟨10.1109/TMI.2016.2646920⟩
DOI
DOI : 10.1109/TMI.2016.2646920
Accès au texte intégral et bibtex
https://inria.hal.science/hal-01436561/file/TMI_FinalVersion_WithoutCopyright.pdf BibTex

Conference papers

titre
Gaining Insights Into Multiple Sclerosis Lesion Characteristics from Brain Tissue Microstructure Information: A Multi-Compartment T2 Relaxometry Approach
auteur
Sudhanya Chatterjee, Olivier Commowick, Simon K. Warfield, Christian Barillot
article
ISMRM 25TH ANNUAL MEETING & EXHIBITION, Apr 2017, Honolulu, Hawaii, USA, United States
Accès au texte intégral et bibtex
https://inserm.hal.science/inserm-01543061/file/Gauss-MCM-poster.pdf BibTex
titre
Multi-Compartment T2 Relaxometry Model Using Gamma Distribution Representations: A Framework for Quantitative Estimation of Brain Tissue Microstructures
auteur
Sudhanya Chatterjee, Olivier Commowick, Simon K. Warfield, Christian Barillot
article
ISMRM 25TH ANNUAL MEETING & EXHIBITION, Apr 2017, Honolulu, Hawaii, USA, United States
Accès au bibtex
BibTex

2016

Conference papers

titre
Comprehensive Maximum Likelihood Estimation of Diffusion Compartment Models Towards Reliable Mapping of Brain Microstructure
auteur
Aymeric Stamm, Olivier Commowick, Simon K Warfield, Simone Vantini
article
19th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), Oct 2016, Athens, Greece. pp.622 – 630, ⟨10.1007/978-3-319-46726-9_72⟩
DOI
DOI : 10.1007/978-3-319-46726-9_72
Accès au texte intégral et bibtex
https://inserm.hal.science/inserm-01349556/file/MICCAI2016.pdf BibTex
titre
Maximum Likelihood Estimators of Brain White Matter Microstructure
auteur
Olivier Commowick, Aymeric Stamm, Simone Vantini, Simon K. Warfield
article
48th Scientific Meeting of the Italian Statistical Society, Jun 2016, Salerno, Italy
Accès au texte intégral et bibtex
https://inserm.hal.science/inserm-01347200/file/SIS2016.pdf BibTex

2015

Conference papers

titre
Symmetric Block-Matching Registration for the Distortion Correction of Echo-Planar Images
auteur
Renaud Hedouin, Olivier Commowick, Maxime Taquet, Elise Bannier, Benoit Scherrer, Simon K. Warfield, Christian Barillot
article
IEEE International Symposium on Biomedical Imaging (ISBI), Apr 2015, New York, United States. pp.717-720
Accès au texte intégral et bibtex
https://inserm.hal.science/inserm-01118766/file/215_0204.pdf BibTex

2014

Journal articles

titre
A Mathematical Framework for the Registration and Analysis of Multi-Fascicle Models for Population Studies of the Brain Microstructure
auteur
Maxime Taquet, Benoit Scherrer, Olivier Commowick, Jurriaan Peters, Mustafa Sahin, Benoît Macq, Simon K. Warfield
article
IEEE Transactions on Medical Imaging, 2014, 33 (2), pp.504-517. ⟨10.1109/TMI.2013.2289381⟩
DOI
DOI : 10.1109/TMI.2013.2289381
Accès au texte intégral et bibtex
https://inserm.hal.science/inserm-00903679/file/taquet_tmi.pdf BibTex

Conference papers

titre
Tracking the Cortico-Spinal Tract as a Multi-Modal Distribution of Streamlines from Local White Matter Microstructure Models
auteur
Aymeric Stamm, Olivier Commowick, Xavier Tomas-Fernandez, Jolene Singh, Simon K. Warfield
article
MICCAI Challenge on DTI Tractography Proceedings, Sep 2014, Boston, United States. pp.21-32
Accès au texte intégral et bibtex
https://inserm.hal.science/inserm-01066812/file/Miccai2014_DTI_Challenge_Stamm_withAcknowlegments.pdf BibTex
titre
Non-central chi estimation of multi-compartment models improves model selection by reducing overfitting
auteur
Aymeric Stamm, Benoit Scherrer, Stefano Baraldo, Olivier Commowick, Simon K. Warfield
article
ISMRM, May 2014, Milan, Italy. pp.2623
Accès au texte intégral et bibtex
https://inserm.hal.science/inserm-00993964/file/2623.pdf BibTex
titre
Fast and robust detection of the optimal number of fascicles in diffusion images using model averaging theory
auteur
Aymeric Stamm, Benoit Scherrer, Olivier Commowick, Christian Barillot, Simon K. Warfield
article
ISMRM, May 2014, Milan, Italy. pp.2629
Accès au texte intégral et bibtex
https://inserm.hal.science/inserm-00993965/file/2629.pdf BibTex

2012

Journal articles

titre
Estimating A Reference Standard Segmentation with Spatially Varying Performance Parameters: Local MAP STAPLE
auteur
Olivier Commowick, Alireza Akhondi-Asl, Simon K. Warfield
article
IEEE Transactions on Medical Imaging, 2012, 31 (8), pp.1593-1606. ⟨10.1109/TMI.2012.2197406⟩
DOI
DOI : 10.1109/TMI.2012.2197406
Accès au texte intégral et bibtex
https://inserm.hal.science/inserm-00697775/file/TMI_LocalStaple_Final.pdf BibTex
titre
Automated delineation of white matter fiber tracts with a multiple region-of-interest approach.
auteur
Ralph O. Suarez, Olivier Commowick, Sanjay P. Prabhu, Simon K. K. Warfield
article
NeuroImage, 2012, 59 (4), pp.3690-3700. ⟨10.1016/j.neuroimage.2011.11.043⟩
DOI
DOI : 10.1016/j.neuroimage.2011.11.043
Accès au bibtex
BibTex

Conference papers

titre
Registration and Analysis of White Matter Group Differences with a Multi-Fiber Model
auteur
Maxime Taquet, Benoit Scherrer, Olivier Commowick, Jurriaan Peters, Mustafa Sahin, Benoît Macq, Simon K. Warfield
article
15th International Conference on Medical Image Computing and Computer Assisted Intervention, Oct 2012, Nice, France. pp.313-320
Accès au texte intégral et bibtex
https://inserm.hal.science/inserm-00716110/file/paper_1124.pdf BibTex

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