Contents
2017 Workshops
Meeting in Boston (November 20-22)
- Workshop program
- [gview file=”https://team.inria.fr/barbant/files/2012/08/Barbant-meeting-agenda-20nov17.pdf”]
- Topics to Discuss:
- Christian Barillot
- Neurofeedback & Hemisfer project on EEG/fMRI reconstruction
- New results from Lorraine’s PhD
- Olivier Commowick
- Results of the MS segmentation challenge from last year
- Discussion on evaluation of diffusion images registration
- Longitudinal atlas creation for pediatric atlas creation
- Simon Warfield and Benoit Scherrer:
- Registration capabilities
- Plan what to do after the associate team is finished (in terms of grant submissions, Inria associate lab, etc.) in order to continue collaboration
- Christian Barillot
Meeting in Rennes (June 12-14)
- Monday June 12th: Renaud Hedouin PhD defense
- Tuesday 13th and Wednesday 14th:
- Joint Visages/Barbant “séminaire au vert”
- [gview file=”https://team.inria.fr/barbant/files/2012/08/Programme_SAV_2017.pdf”]
2016 Workshops
Meeting in Boston (November 15-18)
- Minutes of the joint workshop (private)
Wednesday, November 16th
- 9.30am Welcome & Breakfast.
- 10am-11.00am AU520 – Debriefing Barbant. Where are we at? Where are we going?
- 11.00am-12.30am AU520 – Relaxometry (20min+10min)
- 12.30am-2.00pm Lunch
- 2.00pm-4.00pm LC5231 – Diffusion-weighted imaging (20min+10min)
- 4.00pm- LC5231 – Discussion & work
Thursday, November 17th
- 9.30am LC5230 – Free discussions, breakfast
- 10am-11.00am LC5230 – Segmentation
- 11am-12am CLS12 – Harvard Longwood Epilepsy Grand Rounds
- 12.00am-1.30pm Lunch Break
- 1.30pm-3.00pm
- Analysis and Modeling of the Cortical Surface and the Axon Underlying Architecture
- fMRI in MS
- 3.00pm-5pm : MICCAI segmentation challenge – feedback
Friday, November 18th
- 9.30am – Free discussions, breakfast
- 10am-12.30am – Grant Writing
- 12.30am-3pm – Lunch – Workshop Debriefing
Meeting in Rennes (June 8-10)
- Minutes of the joint workshop (Private)
Wednesday 8th : Quantitative imaging day
Morning: pediatric and quantitative imaging
-
- 10h – 10h30: Pediatric ASL brain perfusion: ROI-based statistics and atlasing (A. Carsin and A. Legouhy, RENNES)
- 10h30 – 11h: Quantitative imaging in multiple sclerosis: study of CIS patients (O. Commowick, Rennes)
- 11h – 11h30: MS Lesion Characterization: A multi-compartment T2 Relaxometry Approach (S. Chatterjee, Rennes-Boston)
- 11h30 – 12h15: Discussion
Afternoon: diffusion imaging
-
- 14h – 14h30: Diffusion modeling and histological validation (B. Scherrer)
- 14h30 – 15h: SUDEP – ex vivo structural and diffusion imaging (S. Warfield)
- 15h – 15h30: Presentation from M. Paquette (U. Sherbrooke)
- 16h – 16h30: Distortion correction and MCM registration: an update (O. Commowick)
- 16h30 – 17h: Predicting the diffusion signal: how general can we do? (E. Caruyer)
- 17h – 17h30: Discussion / planning next workshop in Boston
Thursday, June 9 : « Séminaire au Vert », Mont-St Michel, Day 1
- 10:00 Imaging after traumatic brain injury (-Y. Gauvrit)
- Major impact with elderly population
- Big issues to image the pathology in emergency situation
- 11:00-13:00 Session 1
- Diffusion compartment imaging (DCI): a new insight into mild traumatic brain injury ( Scherrer)
- FLI (France Life Imaging at VisAGeS) (Christian & Michael)
- PhD in France and abroad ( Warfield, C. Barillot)
- 14:30-15:30: Keynote on Multiple Sclerosis ( Edan)
- 16:00-20:00 Afternoon: local visit
- 20:00: Dinner
Friday, June 10 : « Séminaire au Vert », Mont-St Michel, Day 2
- 10:00-11:00: Sessions 1
- Null hypothesis significance testing in the storm: knowing the flaws to avoid bad practices ( Combès)
- Quantifying brain structural connectivity ( Paquette, Univ. Sherbrook)
- 11:00-12:00: Session 2
- The EMISEP Project ( Bannier, A. Kerbrat)
- 180 sec presentations (P-Y. Jonin, L. Perronnet)
- 14:00-15:00: Session 3
- 180 sec presentations [ Meurée, H. Deshpande]
- Collaborative software development ( Leray, O. Commowick, A. Morawin, R.-P. Debroize)
- 15:00-15:30: 180 sec presentations [ Kerbrat, H. Snoussi, S. Chatterjee]
- 16:30: End of the meeting, return to Rennes
2015 Workshops
Meeting in Boston (November 23-26)
Preliminary Program:
- Monday, November 23rd – 333 Longwood LO-03
- Debriefing Barbant.
- Brain connectivity
- Segmentation of Lesions and tuber segmentation
- Evaluation of segmentations
Tuesday, November 24th – 333 Longwood LO-031- Strategies for artifact detection and compensation
- Diffusion Compartment Imaging
Wednesday, November 25th – 333 Longwood LO-031
- Clinical applications
- Diffusion Imaging and Relaxometry.
Meeting in Rennes (June 17-20)
Wednesday 17th
- Relaxometry topics
- Myelin mapping and cortical lesion detection
- Discussion on opportunities in spine imaging
- DIAMOND imaging of the Wallerian degeneration in the rat spinal coord & histological validation
- brain microstructure in diffusion
Thursday 18th
- « Image processing»:
- « Trend in medical imaging, methods and applications » : Emmanuel Caruyer
- « All you ever wanted to know about Machine Learning »: Pierre Maurel
- « Optmisation methods, nlopt library» : Olivier, Benoit
Friday 19th
- « MRI and methodological developments »
- « Real-time fMRI: first experiments » : Marsel Mano, Lorraine Perronnet
- « MR Artifacts » : Onur Afacan, Elise Bannier
- « MR applications» (1h30)
- « Imaging neonates, challenges in medical image processing» : Maia Proisy
- « Neurofeedback for applications in rehabilitation » : Isabelle Bonan
- « Neuropsychology, memory and fMRI» : Pierre-Yves Jonin
- « Data collection and statistical analysis », Aymeric Stamm
2014 Workshops
Meeting in Boston (4-7 November)
Meeting in Rennes (11-13 June)
- Participation to VisAGeS team annual scientific retreat
- Presentation of activity updates on diffusion MRI from both sides
- Discussion and updates on multiple sclerosis related topics: lesion detection, features learning
- Update on shared relaxometry topics: combined estimation and acquisition improvements
- Preparation of 2014 Boston meeting in December
2013 Workshops
Meeting in Boston (4-6 December)
- Status report on DMRI diffusion correction (R. Hedouin)
- Status report on dMRI multi-compartment model selection (A. Stamm, M. Taquet)
- Status report on dMRI multi-fiber modeling with DDI and DIAMOND (A. Stamm, B. Scherrer)
- Status report on MS and machine learning (Y. Karpate)
Meeting in Rennes (10-12 June)
- Participation to VisAGeS team annual scientific retreat
- Presentation of activity updates on diffusion MRI from both sides: multi-tensor estimation from single shell data, model averaging or selection strategies, registration…
- Discussion and updates on two ongoing internships related to the associate team project: automatic detection of focal cortical dysplasia from DIR images, distortion correction in EPI images
- Update on shared topics and mutualization of data to compare approaches
- Preparation of 2013 Boston meeting in December
2012 Workshops
Meeting in Boston (19-20 November)
- Discussion and presentation of activities on EEG, specific diffusion imaging and neonatal imaging acquisitions, developments on image and MS lesions segmentation.
- Starting short-term and longer-term collaborations: internships on diffusion imaging, comparison of diffusion models
- Preparation of 2013 meetings
Meeting in Rennes (26-28 September)
- Discussion and presentation of activities on diffusion MRI, presentation of the Diffusion Direction Imaging model and comparison with respect to multi-tensor model and multi-shell diffusion.
- Set up of a milestone on comparative multi-site studies on both MR systems at Boston and Rennes
- Discussion and presentation of activities on Multiple Sclerosis, with definition of short term and long term milestones (segmentation of lesions, characterization of NAWM tissue including Diffusion MRI, MTR and relaxometry)
- Discussion on robust group comparison approaches for diffusion MRI in the two teams and on collaborations on these aspects
- Preparation of 2012 Boston meeting in November