On-going and past projects of IBIS:
- AnaComBa: Analysis of bacterial communities: stochastic modelling (2021-2024), Équipe-Action PERSYVAL-lab
- Ctrl-AB : Optimization and control of the productivity of an algal-bacterial consortium (2020-2024), ANR
- MOSTIC: Stochastic modelling and inference for cell communities in interaction (2020-2022), IXXI
- OPTICO : OPTImal COntrol software for microbial communities in a system of minibioreactors (2019-2021), Inria ADT
- RIB-ECO (RIBonucleotide ECOnomy): Engineering RNA life cycle to optimize economy of microbial energy (2018-2022), ANR
- MuSE: MUlti-Omics and Metabolic models integration to study growth transition in Escherichia coli (2018-2020), IXXI/BioSyl
- Maximic: Optimal control of microbial cells by natural and synthetic strategies (2017-2021), ANR
- CoSoft: Control software for a system of mini-bioreactors (2017-2018), Inria ADT
- COSY: Real-time control of synthetic microbial communities (2017-2021), Inria Project Lab
- FluoBacTracker: Adaptation et valorisation scientifique du logiciel FluoBacTracker (2016-2017), InriaHub
- MEMIP : Mixed-effect models for cellular processes: methods, tools, and applications applications (2016-2020), ANR
- ENZINVIVO : In-vivo determination of enzymatic parameters in a synthetic metabolic pathway (2016-2020), ANR
- WellInverter: A web application for the analysis of time-series fluorescent reporter gene data (2016-2017), Development of innovative bioinformatics services for life sciences, Institut Français de Bioinformatique (IFB)
- RESET : Arrest and restart of the gene expression machinery in bacteria : from mathematical models to biotechnological applications (2012-2017), Investissements d’Avenir, Bioinformatique
- GemCO : Model reduction, experimental validation, and control for the gene expression machinery in E. coli (2010-2013), ANR Blanc
- ColAge : Natural and engineering solutions to the control of bacterial growth and aging (2009-2013), Large-Scale Initiative Action INRIA-INSERM
- MetaGenoReg : Towards an understanding of the interrelations between metabolic and gene regulation : E. coli carbon metabolism as a test case (2006-2010), ANR Biologie systémique (BIOSYS)
- EC-MOAN : Scalable modeling and analysis techniques to study emergent cell behavior : Understanding the E. coli stress response (2007-2009), NEST-2005-2 PATHFINDER
- COBIOS : Engineering and control of biological systems : A new way to tackle complex diseases and biotechnological innovation (2007-2009), NEST-2005-2 PATHFINDER
