Publications

Followings are publications authored by the HeKA team as declared on HAL, starting from 2021.

Publications HAL de la structure 1067737

2022

Journal articles

titre
Privacy-preserving mimic models for clinical named entity recognition in French
auteur
Nesrine Bannour, Perceval Wajsbürt, Bastien Rance, Xavier Tannier, Aurélie Névéol
article
Journal of Biomedical Informatics, Elsevier, 2022, 130, pp.104073. ⟨10.1016/j.jbi.2022.104073⟩
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-03655039/file/Privacy_Preserving_Mimic_Models_for_clinical_Named_EntityRecognition__JBI_2021_.pdf BibTex
titre
Étudier les mécanismes des effets indésirables des médicaments avec l’IA explicable : expériences avec la fouille de graphes de connaissances
auteur
Pierre Monnin, Adrien Coulet
article
Bulletin de l’Association Française pour l’Intelligence Artificielle, AFIA, 2022
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-03669065/file/afia_adr_explanations.pdf BibTex
titre
Projet ANR (2016-2021) « PractiKPharma » : extraction, comparaison et découverte de connaissances en pharmacogénomique
auteur
Pierre Monnin, Adrien Coulet
article
1024 : Bulletin de la Société Informatique de France, Société Informatique de France, 2022, pp.109 – 120. ⟨10.48556/sif.1024.19.109⟩
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-03669026/file/1024_19_2022_109.pdf BibTex
titre
Decision-support systems for managing polypharmacy in the elderly: A scoping review
auteur
Abdelmalek Mouazer, Rosy Tsopra, Karima Sedki, C Letord, Jean-Baptiste Lamy
article
Journal of Biomedical Informatics, Elsevier, 2022, pp.104074. ⟨10.1016/j.jbi.2022.104074⟩
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titre
Patient-Patient Similarity-Based Screening of a Clinical Data Warehouse to Support Ciliopathy Diagnosis
auteur
Xiaoyi Chen, Carole Faviez, Marc Vincent, Luis Briseño-Roa, Hassan Faour, Jean-Philippe Annereau, Stanislas Lyonnet, Mohamad Zaidan, Sophie Saunier, Nicolas Garcelon, Anita Burgun
article
Frontiers in Pharmacology, Frontiers, 2022, 13, ⟨10.3389/fphar.2022.786710⟩
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titre
The ongoing French BaMaRa-BNDMR cohort: implementation and deployment of a nationwide information system on rare disease
auteur
Anne-Sophie Jannot, Claude Messiaen, Ahlem Khatim, Thibaut Pichon, Arnaud Sandrin
article
Journal of the American Medical Informatics Association, BMJ Publishing Group, 2022, 29 (3), pp.553-558. ⟨10.1093/jamia/ocab237⟩
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titre
Encouraging Behavior Changes and Preventing Cardiovascular Diseases Using the Prevent Connect Mobile Health App: Conception and Evaluation of App Quality
auteur
Dahbia Agher, Karima Sedki, Sylvie Despres, Jean-Pierre Albinet, Marie-Christine Jaulent, Rosy Tsopra
article
Journal of Medical Internet Research, JMIR Publications, 2022, 24 (1), pp.e25384. ⟨10.2196/25384⟩
Accès au texte intégral et bibtex
https://hal.sorbonne-universite.fr/hal-03539411/file/PDF.pdf BibTex
titre
One-Anastomosis Gastric Bypass Revision for Gastroesophageal Reflux Disease: Long Versus Short Biliopancreatic Limb Roux-en-Y Gastric Bypass
auteur
Ahmad Tarhini, Claire Rives-Lange, Anne-Sophie Jannot, Clement Baratte, Nathan Beaupel, Vincent Guillet, Sylvia Krivan, Maude Le Gall, Claire Carette, Sebastien Czernichow, Jean-Marc Chevallier, Tigran Poghosyan
article
Obesity Surgery, Springer Verlag, 2022, ⟨10.1007/s11695-022-05892-6⟩
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titre
Clinical diagnosis, outcomes and treatment of thiamine deficiency in a tertiary hospital
auteur
François Mifsud, Diane Messager, Anne-Sophie Jannot, Benoît Védie, Nadia Aissaoui Balanant, Tigran Poghosyan, Edouard Flamarion, Claire Carette, Léa Lucas-Martini, Sébastien Czernichow, Claire Rives-Lange
article
Clinical Nutrition, 2022, 41 (1), pp.33-39. ⟨10.1016/j.clnu.2021.10.021⟩
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titre
Mining electronic health records for drugs associated with 28-days mortality in COVID-19: a pharmacopoeia wide association study (PharmWAS)
auteur
Ivan Lerner, Arnaud Serret-Larmande, Bastien Rance, Nicolas Garcelon, Anita Burgun, Laurent Chouchana, Antoine Neuraz
article
JMIR Medical Informatics, JMIR Publications, 2022, 10 (3), pp.e35190. ⟨10.2196/35190⟩
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-03625377/file/preprint-35190-accepted.pdf BibTex
titre
Association Between Exposure to Effervescent Paracetamol and Hospitalization for Acute Heart Failure: A Case-Crossover Study
auteur
Germain Perrin, Armelle Arnoux, Sarah Berdot, Sandrine Katsahian, Nicolas Danchin, Brigitte Sabatier
article
Journal of Clinical Pharmacology, Wiley, 2022, ⟨10.1002/jcph.2027⟩
Accès au texte intégral et bibtex
https://hal.sorbonne-universite.fr/hal-03644630/file/TheJournalofClinicalPharma-2022-Perrin-AssociationBetweenExposuretoEffervescentParacetamoland%20%281%29.pdf BibTex

Preprints, Working Papers, …

titre
A Deep Learning Approach to Solving Morphological Analogies
auteur
Esteban Marquer, Safa Alsaidi, Amandine Decker, Pierre-Alexandre Murena, Miguel Couceiro
article
2022
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-03660625/file/ICCBR___Analogy_Solving_by_Retrieval_in_Morphology___LNCS.pdf BibTex
titre
Wavelet-Based Multiscale Initial Flow For Improved Atlas Estimation in the Large Diffeomorphic Deformation Model Framework
auteur
Fleur Gaudfernau, Eléonore Blondiaux, Stéphanie Allassonnière, Erwan Le Pennec
article
2022
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-03620367/file/Gaudfernau_2022_IJCV_CTF.pdf BibTex
titre
Analysis of the Anatomical Variability of Fetal Brains with Corpus Callosum Agenesis
auteur
Fleur Gaudfernau, Eleonore Blondiaux, Stéphanie Allassonnière
article
2022
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-03546165/file/Article_2021___anatomical_variability_CC_agenesis_MELBA2%285%29%284%29.pdf BibTex

2021

Journal articles

titre
Effectiveness of a ‘do not interrupt’ vest intervention to reduce medication errors during medication administration: a multicenter cluster randomized controlled trial
auteur
Sarah Berdot, Aurélie Vilfaillot, Yvonnick Bezie, Germain Perrin, Marion Berge, Jennifer Corny, Thuy Tan Phan Thi, Mathieu Depoisson, Claudine Guihaire, Nathalie Valin, Claudine Decelle, Alexandre Karras, Pierre Durieux, Laetitia Minh Maï Lê, Brigitte Sabatier
article
BMC Nursing, BioMed Central, 2021, 20 (1), ⟨10.1186/s12912-021-00671-7⟩
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titre
Evolving phenotypes of non-hospitalized patients that indicate long COVID
auteur
Hossein Estiri, Zachary Strasser, Gabriel Brat, Yevgeniy Semenov, Chirag Patel, Shawn Murphy, James Aaron, Giuseppe Agapito, Adem Albayrak, Mario Alessiani, Danilo Amendola, Li Anthony, Bruce Aronow, Fatima Ashraf, Andrew Atz, Paul Avillach, James Balshi, Brett Beaulieu-Jones, Douglas Bell, Antonio Bellasi, Riccardo Bellazzi, Vincent Benoit, Michele Beraghi, José Luis Bernal Sobrino, Mélodie Bernaux, Romain Bey, Alvar Blanco Martínez, Martin Boeker, Clara-Lea Bonzel, John Booth, Silvano Bosari, Florence Bourgeois, Robert Bradford, Stéphane Bréant, Nicholas Brown, William Bryant, Mauro Bucalo, Anita Burgun, Tianxi Cai, Mario Cannataro, Aldo Carmona, Charlotte Caucheteux, Julien Champ, Jin Chen, Krista Chen, Luca Chiovato, Lorenzo Chiudinelli, Kelly Cho, James Cimino, Tiago Colicchio, Sylvie Cormont, Sébastien Cossin, Jean Craig, Juan Luis Cruz Bermúdez, Jaime Cruz Rojo, Arianna Dagliati, Mohamad Daniar, Christel Daniel, Anahita Davoudi, Batsal Devkota, Julien Dubiel, Loic Esteve, Shirley Fan, Robert Follett, Paula Gaiolla, Thomas Ganslandt, Noelia García Barrio, Lana Garmire, Nils Gehlenborg, Alon Geva, Tobias Gradinger, Alexandre Gramfort, Romain Griffier, Nicolas Griffon, Olivier Grisel, Alba Gutiérrez-Sacristán, David Hanauer, Christian Haverkamp, Bing He, Darren Henderson, Martin Hilka, John Holmes, Chuan Hong, Petar Horki, Kenneth Huling, Meghan Hutch, Richard Issitt, Anne Sophie Jannot, Vianney Jouhet, Mark Keller, Katie Kirchoff, Jeffrey Klann, Isaac Kohane, Ian Krantz, Detlef Kraska, Ashok Krishnamurthy, Sehi L’yi, Trang Le, Judith Leblanc, Andressa Leite, Guillaume Lemaitre, Leslie Lenert, Damien Leprovost, Molei Liu, Ne Hooi Will Loh, Sara Lozano-Zahonero, Yuan Luo, Kristine Lynch, Sadiqa Mahmood, Sarah Maidlow, Alberto Malovini, Kenneth Mandl, Chengsheng Mao, Anupama Maram, Patricia Martel, Aaron Masino, Maria Mazzitelli, Arthur Mensch, Marianna Milano, Marcos Minicucci, Bertrand Moal, Jason Moore, Cinta Moraleda, Jeffrey Morris, Michele Morris, Karyn Moshal, Sajad Mousavi, Danielle Mowery, Douglas Murad, Thomas Naughton, Antoine Neuraz, Kee Yuan Ngiam, James Norman, Jihad Obeid, Marina Okoshi, Karen Olson, Gilbert Omenn, Nina Orlova, Brian Ostasiewski, Nathan Palmer, Nicolas Paris, Lav Patel, Miguel Pedrera Jimenez, Emily Pfaff, Danielle Pillion, Hans Prokosch, Robson Prudente, Víctor Quirós González, Rachel Ramoni, Maryna Raskin, Siegbert Rieg, Gustavo Roig Domínguez, Pablo Rojo, Carlos Sáez, Elisa Salamanca, Malarkodi Samayamuthu, Arnaud Sandrin, Janaina Santos, Maria Savino, Emily Schriver, Petra Schubert, Juergen Schuettler, Luigia Scudeller, Neil Sebire, Pablo Serrano Balazote, Patricia Serre, Arnaud Serret-Larmande, Zahra Shakeri, Domenick Silvio, Piotr Sliz, Jiyeon Son, Charles Sonday, Andrew South, Anastasia Spiridou, Amelia Tan, Bryce Tan, Byorn Tan, Suzana Tanni, Deanne Taylor, Ana Terriza Torres, Valentina Tibollo, Patric Tippmann, Carlo Torti, Enrico Trecarichi, Yi-Ju Tseng, Andrew Vallejos, Gael Varoquaux, Margaret Vella, Guillaume Verdy, Jill-Jênn Vie, Shyam Visweswaran, Michele Vitacca, Kavishwar Wagholikar, Lemuel Waitman, Xuan Wang, Demian Wassermann, Griffin Weber, Zongqi Xia, Nadir Yehya, William Yuan, Alberto Zambelli, Harrison Zhang, Daniel Zoeller, Chiara Zucco
article
BMC Medicine, BioMed Central, 2021, 19 (1), pp.249. ⟨10.1186/s12916-021-02115-0⟩
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titre
Multinational characterization of neurological phenotypes in patients hospitalized with COVID-19
auteur
Trang Le, Alba Gutiérrez-Sacristán, Jiyeon Son, Chuan Hong, Andrew South, Brett Beaulieu-Jones, Ne Hooi Will Loh, Yuan Luo, Michele Morris, Kee Yuan Ngiam, Lav Patel, Malarkodi Samayamuthu, Emily Schriver, Amelia Tan, Jason Moore, Tianxi Cai, Gilbert Omenn, Paul Avillach, Isaac Kohane, Shyam Visweswaran, Danielle Mowery, Zongqi Xia, James Aaron, Giuseppe Agapito, Adem Albayrak, Mario Alessiani, Danilo Amendola, François Angoulvant, Li Anthony, Bruce Aronow, Andrew Atz, James Balshi, Douglas Bell, Antonio Bellasi, Riccardo Bellazzi, Vincent Benoit, Michele Beraghi, José Luis Bernal Sobrino, Mélodie Bernaux, Romain Bey, Alvar Blanco Martínez, Martin Boeker, Clara-Lea Bonzel, John Booth, Silvano Bosari, Florence Bourgeois, Robert Bradford, Gabriel Brat, Stéphane Bréant, Nicholas Brown, William Bryant, Mauro Bucalo, Anita Burgun, Mario Cannataro, Aldo Carmona, Charlotte Caucheteux, Julien Champ, Krista Chen, Jin Chen, Luca Chiovato, Lorenzo Chiudinelli, James Cimino, Tiago Colicchio, Sylvie Cormont, Sébastien Cossin, Jean Craig, Juan Luis Cruz Bermúdez, Jaime Cruz Rojo, Arianna Dagliati, Mohamad Daniar, Christel Daniel, Anahita Davoudi, Batsal Devkota, Julien Dubiel, Loic Esteve, Shirley Fan, Robert Follett, Paula Gaiolla, Thomas Ganslandt, Noelia García Barrio, Lana Garmire, Nils Gehlenborg, Alon Geva, Tobias Gradinger, Alexandre Gramfort, Romain Griffier, Nicolas Griffon, Olivier Grisel, David Hanauer, Christian Haverkamp, Bing He, Darren Henderson, Martin Hilka, John Holmes, Petar Horki, Kenneth Huling, Meghan Hutch, Richard Issitt, Anne Sophie Jannot, Vianney Jouhet, Ramakanth Kavuluru, Mark Keller, Katie Kirchoff, Jeffrey Klann, Ian Krantz, Detlef Kraska, Ashok Krishnamurthy, Sehi L’yi, Judith Leblanc, Andressa Leite, Guillaume Lemaitre, Leslie Lenert, Damien Leprovost, Molei Liu, Sarah Lozano-Zahonero, Kristine Lynch, Sadiqa Mahmood, Sarah Maidlow, Adeline Makoudjou Tchendjou, Alberto Malovini, Kenneth Mandl, Chengsheng Mao, Anupama Maram, Patricia Martel, Aaron Masino, Michael Matheny, Thomas Maulhardt, Maria Mazzitelli, Michael Mcduffie, Arthur Mensch, Fatima Ashraf, Marianna Milano, Marcos Minicucci, Bertrand Moal, Cinta Moraleda, Jeffrey Morris, Karyn Moshal, Sajad Mousavi, Douglas Murad, Shawn Murphy, Thomas Naughton, Antoine Neuraz, James Norman, Jihad Obeid, Marina Okoshi, Karen Olson, Nina Orlova, Brian Ostasiewski, Nathan Palmer, Nicolas Paris, Miguel Pedrera Jimenez, Emily Pfaff, Danielle Pillion, Hans Prokosch, Robson Prudente, Víctor Quirós González, Rachel Ramoni, Maryna Raskin, Siegbert Rieg, Gustavo Roig Domínguez, Pablo Rojo, Carlos Sáez, Elisa Salamanca, Arnaud Sandrin, Janaina Santos, Maria Savino, Juergen Schuettler, Luigia Scudeller, Neil Sebire, Pablo Serrano Balazote, Patricia Serre, Arnaud Serret-Larmande, Zahra Shakeri, Domenick Silvio, Piotr Sliz, Charles Sonday, Anastasia Spiridou, Bryce Tan, Byorn Tan, Suzana Tanni, Deanne Taylor, Ana Terriza-Torres, Valentina Tibollo, Patric Tippmann, Carlo Torti, Enrico Trecarichi, Yi-Ju Tseng, Andrew Vallejos, Gael Varoquaux, Margaret Vella, Jill-Jênn Vie, Michele Vitacca, Kavishwar Wagholikar, Lemuel Waitman, Demian Wassermann, Griffin Weber, Yuan William, Nadir Yehya, Alberto Zambelli, Harrison Zhang, Daniela Zoeller, Chiara Zucco
article
Scientific Reports, Nature Publishing Group, 2021, 11 (1), pp.20238. ⟨10.1038/s41598-021-99481-9⟩
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titre
Discovering alignment relations with Graph Convolutional Networks: A biomedical case study
auteur
Pierre Monnin, Chedy Raïssi, Amedeo Napoli, Adrien Coulet
article
Semantic Web – Interoperability, Usability, Applicability, IOS Press, 2021, pp.1-20. ⟨10.3233/SW-210452⟩
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-03452182/file/sw%252F2022%252F13-3%252Fsw-13-3-sw210452%252Fsw-13-sw210452.pdf BibTex
titre
A framework for validating AI in precision medicine: considerations from the European ITFoC consortium
auteur
Rosy Tsopra, Xose Fernandez, Claudio Luchinat, Lilia Alberghina, Hans Lehrach, Marco Vanoni, Felix Dreher, O Sezerman, Marc Cuggia, Marie de Tayrac, Edvins Miklasevics, Lucian Itu, Marius Geanta, Lesley Ogilvie, Florence Godey, Cristian Boldisor, Boris Campillo-Gimenez, Cosmina Cioroboiu, Costin Ciusdel, Simona Coman, Oliver Hijano Cubelos, Alina Itu, Bodo Lange, Matthieu Le Gallo, Alexandra Lespagnol, Giancarlo Mauri, H Soykam, Bastien Rance, Paola Turano, Leonardo Tenori, Alessia Vignoli, Christoph Wierling, Nora Benhabiles, Anita Burgun
article
BMC Medical Informatics and Decision Making, BioMed Central, 2021, 21 (1), pp.274. ⟨10.1186/s12911-021-01634-3⟩
Accès au texte intégral et bibtex
https://www.hal.inserm.fr/inserm-03373629/file/s12911-021-01634-3.pdf BibTex
titre
Postnatal Diagnostic Workup in Children With Arthrogryposis: A Series of 82 Patients
auteur
Judith Chareyre, Antoine Neuraz, Alina Badina, Christine Barnerias, Marie Hully, Elsa Kermorvant-Duchemin, Elise Leroy-Terquem, Robert Carlier, Judith Melki, Isabelle Desguerre, Cyril Gitiaux
article
Journal of Child Neurology, SAGE Publications (UK and US), 2021, 36 (12), pp.1071-1077. ⟨10.1177/08830738211022972⟩
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titre
The economic burden of allergic comorbidities in pediatric severe asthma
auteur
Gizem Pamuk, Muriel Le Bourgeois, Rola Abou Taam, Antoine Neuraz, Jacques de Blic, Christophe Delacourt, Guillaume Lezmi
article
Pediatric Allergy and Immunology, Wiley, 2021, 32 (7), pp.1559-1565. ⟨10.1111/pai.13532⟩
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titre
Change in Birth Rate Before and After Bariatric Surgery in France
auteur
Claire Rives-Lange, Yannick Girardeau, Tigran Poghosyan, Cecile Ciangura, Muriel Coupaye, Jacky Nizard, Amel Ait-Boudaoud, Claire Carette, Anne-Sophie Jannot, Sébastien Czernichow
article
Obesity Surgery, Springer Verlag, 2021, 31 (10), pp.4657-4661. ⟨10.1007/s11695-021-05561-0⟩
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titre
Bayesian modeling of a bivariate toxicity outcome for early phase oncology trials evaluating dose regimens
auteur
Emma Gerard, Sarah Zohar, Christelle Lorenzato, Moreno Ursino, Marie‐karelle Riviere
article
Statistics in Medicine, Wiley-Blackwell, 2021, ⟨10.1002/sim.9113⟩
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titre
Syntax-based transfer learning for the task of biomedical relation extraction
auteur
Joël Legrand, Yannick Toussaint, Chedy Raïssi, Adrien Coulet
article
Journal of Biomedical Semantics, BioMed Central, 2021, 12 (1), ⟨10.1186/s13326-021-00248-y⟩
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titre
Therapy for Multisystem Inflammatory Syndrome in Children
auteur
François Angoulvant
article
New England Journal of Medicine, Massachusetts Medical Society, 2021, ⟨10.1056/NEJMc2111096⟩
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titre
International Analysis of Electronic Health Records of Children and Youth Hospitalized With COVID-19 Infection in 6 Countries
auteur
Florence Bourgeois, Alba Gutiérrez-Sacristán, Mark Keller, Molei Liu, Chuan Hong, Clara-Lea Bonzel, Amelia Tan, Bruce Aronow, Martin Boeker, John Booth, Jaime Cruz Rojo, Batsal Devkota, Noelia García Barrio, Nils Gehlenborg, Alon Geva, David Hanauer, Meghan Hutch, Richard Issitt, Jeffrey Klann, Yuan Luo, Kenneth Mandl, Chengsheng Mao, Bertrand Moal, Karyn Moshal, Shawn Murphy, Antoine Neuraz, Kee Yuan Ngiam, Gilbert Omenn, Lav Patel, Miguel Pedrera Jiménez, Neil Sebire, Pablo Serrano Balazote, Arnaud Serret-Larmande, Andrew South, Anastasia Spiridou, Deanne Taylor, Patric Tippmann, Shyam Visweswaran, Griffin Weber, Isaac Kohane, Tianxi Cai, Paul Avillach, Jaime Cruz-Rojo, Noelia García-Barrio, Miguel Pedrera-Jiménez, Pablo Serrano-Balazote, James Aaron, Giuseppe Agapito, Adem Albayrak, Mario Alessiani, Danilo Amendola, François Angoulvant, Li Llj Anthony, Andrew Atz, James Balshi, Brett Beaulieu-Jones, Douglas Bell, Antonio Bellasi, Riccardo Bellazzi, Vincent Benoit, Michele Beraghi, José Luis Bernal Sobrino, Mélodie Bernaux, Romain Bey, Alvar Blanco Martínez, Silvano Bosari, Robert Bradford, Gabriel Brat, Stéphane Bréant, Nicholas Brown, William Bryant, Mauro Bucalo, Anita Burgun, Mario Cannataro, Aldo Carmona, Charlotte Caucheteux, Julien Champ, Krista Chen, Jin Chen, Luca Chiovato, Lorenzo Chiudinelli, James Cimino, Tiago Colicchio, Sylvie Cormont, Sébastien Cossin, Jean Craig, Juan Luis Cruz Bermúdez, Arianna Dagliati, Mohamad Daniar, Christel Daniel, Anahita Davoudi, Julien Dubiel, Scott Duvall, Loic Esteve, Shirley Fan, Robert Follett, Paula Sa Gaiolla, Thomas Ganslandt, Lana Garmire, Tobias Gradinger, Alexandre Gramfort, Romain Griffier, Nicolas Griffon, Olivier Grisel, Christian Haverkamp, Bing He, Darren Henderson, Martin Hilka, John Holmes, Petar Horki, Kenneth Huling, Anne Sophie Jannot, Vianney Jouhet, Ramakanth Kavuluru, Katie Kirchoff, Ian Krantz, Detlef Kraska, Ashok Krishnamurthy, Sehi l’Yi, Trang Le, Judith Leblanc, Andressa Rr Leite, Guillaume Lemaitre, Leslie Lenert, Damien Leprovost, Ne Hooi Will Loh, Kristine Lynch, Sadiqa Mahmood, Sarah Maidlow, Alberto Malovini, Anupama Maram, Patricia Martel, Aaron Masino, Michael Matheny, Thomas Maulhardt, Maria Mazzitelli, Michael Mcduffie, Arthur Mensch, Marianna Milano, Marcos Minicucci, Jason Moore, Cinta Moraleda, Jeffrey Morris, Michele Morris, Sajad Mousavi, Danielle Mowery, Douglas Murad, Thomas Naughton, James Norman, Jihad Obeid, Marina Okoshi, Karen Olson, Nina Orlova, Brian Ostasiewski, Nathan Palmer, Nicolas Paris, Emily Pfaff, Danielle Pillion, Hans Prokosch, Robson Prudente, Víctor Quirós González, Rachel Ramoni, Maryna Raskin, Siegbert Rieg, Gustavo Roig Domínguez, Pablo Rojo, Carlos Sáez, Elisa Salamanca, Malarkodi Samayamuthu, Arnaud Sandrin, Janaina Cc Santos, Maria Savino, Emily Schriver, Juergen Schuettler, Luigia Scudeller, Patricia Serre, Domenick Silvio, Piotr Sliz, Jiyeon Son, Charles Sonday, Bryce Wq Tan, Byorn Wl Tan, Suzana Tanni, Ana Terriza Torres, Valentina Tibollo, Carlo Torti, Enrico Trecarichi, Yi-Ju Tseng, Andrew Vallejos, Gael Varoquaux, Jill-Jênn Vie, Michele Vitacca, Kavishwar Wagholikar, Lemuel Waitman, Demian Wassermann, Yuan William, Zongqi Xia, Nadir Yehya, Alberto Zambelli, Harrison Zhang, Chiara Zucco
article
JAMA Network Open, American Medical Association, 2021, 4 (6), pp.e2112596. ⟨10.1001/jamanetworkopen.2021.12596⟩
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titre
Conditional Non-parametric Bootstrap for Non-linear Mixed Effect Models
auteur
Emmanuelle Comets, Christelle Rodrigues, Vincent Jullien, Moreno Ursino
article
Pharmaceutical Research, American Association of Pharmaceutical Scientists, 2021, 38 (6), pp.1057-1066. ⟨10.1007/s11095-021-03052-6⟩
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https://hal.archives-ouvertes.fr/hal-03280469/file/cometsCondBoot_revised.pdf BibTex
titre
Identification of Similar Patients Through Medical Concept Embedding from Electronic Health Records: A Feasibility Study for Rare Disease Diagnosis
auteur
Xiaoyi Chen, Carole Faviez, Marc Vincent, Nicolas Garcelon, Sophie Saunier, Anita Burgun
article
Studies in Health Technology and Informatics, IOS Press, 2021, ⟨10.3233/shti210241⟩
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https://hal.archives-ouvertes.fr/hal-03253313/file/SHTI-281-SHTI210241.pdf BibTex
titre
Fuzzy Matching for Symptom Detection in Tweets: Application to Covid-19 During the First Wave of the Pandemic in France
auteur
Carole Faviez, Pierre Foulquié, Xiaoyi Chen, Adel Mebarki, Sophie Quennelle, Nathalie Texier, Sandrine Katsahian, Stéphane Schuck, Anita Burgun
article
Studies in Health Technology and Informatics, IOS Press, 2021, ⟨10.3233/shti210308⟩
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https://hal.archives-ouvertes.fr/hal-03253247/file/SHTI-281-SHTI210308.pdf BibTex
titre
Investigating ADR mechanisms with Explainable AI: a feasibility study with knowledge graph mining
auteur
Emmanuel Bresso, Pierre Monnin, Cédric Bousquet, François-Elie Calvier, Ndeye-Coumba Ndiaye, Nadine Petitpain, Malika Smaïl-Tabbone, Adrien Coulet
article
BMC Medical Informatics and Decision Making, BioMed Central, 2021, 21 (1), pp.171. ⟨10.1186/s12911-021-01518-6⟩
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https://hal.inria.fr/hal-03240476/file/s12911-021-01518-6.pdf BibTex
titre
Between competence and warmth: the remaining place of the physician in the era of artificial intelligence
auteur
David Drummond
article
npj Digital Medicine, Nature Research 2021, 4 (1), pp.85. ⟨10.1038/s41746-021-00457-w⟩
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https://hal.sorbonne-universite.fr/hal-03229495/file/s41746-021-00457-w.pdf BibTex
titre
Pharmaceutical consultation to detect drug interactions in patients treated with oral chemotherapies: A descriptive cross‐sectional study
auteur
Célia Lachuer, Germain Perrin, Aymeric Chastel, Hail Aboudagga, Constance Thibault, Nicolas Delanoy, Eric Caudron, Brigitte Sabatier
article
European Journal of Cancer Care, Wiley, 2021, 30 (3), ⟨10.1111/ecc.13396⟩
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titre
The Use of Translational Modelling and Simulation to Develop Immunomodulatory Therapy as an Adjunct to Antibiotic Treatment in the Context of Pneumonia
auteur
Robin Michelet, Moreno Ursino, Sandrine Boulet, Sebastian Franck, Fiordiligie Casilag, Mara Baldry, Jens Rolff, Madelé van Dyk, Sebastian Wicha, Jean-Claude Sirard, Emmanuelle Comets, Sarah Zohar, Charlotte Kloft
article
Pharmaceutics, MDPI, 2021, 13 (5), pp.601. ⟨10.3390/pharmaceutics13050601⟩
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https://hal.sorbonne-universite.fr/hal-03215662/file/pharmaceutics-13-00601.pdf BibTex
titre
L’équipe-projet HeKA
auteur
Adrien Coulet, Stéphanie Allassonniere, François Angoulvant, Anita Burgun, Xiaoyi Chen, David Drummond, Nicolas Garcelon, Anne-Sophie Jannot, Sandrine Katsahian, Antoine Neuraz, Bastien Rance, Brigitte Sabatier, Rosy Tsopra, Moreno Ursino, Sarah Zohar
article
Bulletin de l’Association Française pour l’Intelligence Artificielle, AFIA, 2021, pp.29-32
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https://hal.inria.fr/hal-03485904/file/equipe-projet_heka.pdf BibTex
titre
Concerns Discussed on Chinese and French Social Media During the COVID-19 Lockdown: Comparative Infodemiology Study Based on Topic Modeling
auteur
Stéphane Schück, Pierre Foulquié, Adel Mebarki, Carole Faviez, Mickaïl Khadhar, Nathalie Texier, Sandrine Katsahian, Anita Burgun, Xiaoyi Chen
article
JMIR Formative Research, JMIR Publications 2021, 5 (4), pp.e23593. ⟨10.2196/23593⟩
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titre
Parents’ views on artificial intelligence for the daily management of childhood asthma: a survey
auteur
Cindy Abdoul, Pierrick Cros, Laurianne Coutier, Alice Hadchouel, Antoine Neuraz, Anita Burgun, Lisa Giovannini-Chami, David Drummond
article
Journal of Allergy and Clinical Immunology: In Practice, Elsevier, 2021, 9 (4), pp.1728-1730.e3. ⟨10.1016/j.jaip.2020.11.048⟩
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titre
Understanding the Variability in Graph Data Sets through Statistical Modeling on the Stiefel Manifold
auteur
Clément Mantoux, Baptiste Couvy-Duchesne, Federica Cacciamani, Stéphane Epelbaum, Stanley Durrleman​, Stéphanie Allassonnière
article
Entropy, MDPI, 2021, 23 (4), pp.490. ⟨10.3390/e23040490⟩
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https://hal.sorbonne-universite.fr/hal-03215733/file/entropy-23-00490-v2.pdf BibTex
titre
Criteria for the Regression of Pediatric Mastocytosis: A Long-Term Follow-Up
auteur
Laura Polivka, Julien Rossignol, Antoine Neuraz, Djiba Condé, Julie Agopian, Cécile Méni, Nicolas Garcelon, Patrice Dubreuil, Leïla Maouche-Chrétien, Smail Hadj-Rabia, Olivier Hermine, Christine Bodemer
article
Journal of Allergy and Clinical Immunology: In Practice, Elsevier, 2021, 9 (4), pp.1695-1704.e5. ⟨10.1016/j.jaip.2020.12.019⟩
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titre
Random-effects meta-analysis of Phase I dose-finding studies using stochastic process priors
auteur
Moreno Ursino, Christian Röver, Sarah Zohar, Tim Friede
article
Annals of Applied Statistics, Institute of Mathematical Statistics, 2021, 15 (1), ⟨10.1214/20-AOAS1390⟩
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https://hal.sorbonne-universite.fr/hal-03206436/file/20-AOAS1390.pdf BibTex
titre
Hybrid Deep Learning for Medication-Related Information Extraction From Clinical Texts in French: MedExt Algorithm Development Study
auteur
Jordan Jouffroy, Sarah Feldman, Ivan Lerner, Bastien Rance, Anita Burgun, Antoine Neuraz
article
JMIR Medical Informatics, JMIR Publications, 2021, 9 (3), pp.e17934. ⟨10.2196/17934⟩
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titre
The Epidemiology of Patients’ Email Addresses in a French University Hospital: Case-Control Study
auteur
Vincent Looten, Antoine Neuraz, Nicolas Garcelon, Anita Burgun, Gilles Chatellier, Bastien Rance
article
Journal of Medical Internet Research, JMIR Publications, 2021, 23 (2), pp.e13992. ⟨10.2196/13992⟩
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titre
International Changes in COVID-19 Clinical Trajectories Across 315 Hospitals and 6 Countries: Retrospective Cohort Study
auteur
Griffin Weber, Harrison Zhang, Sehi l’Yi, Clara-Lea Bonzel, Chuan Hong, Paul Avillach, Alba Gutiérrez-Sacristán, Nathan Palmer, Amelia Li Min Tan, Xuan Wang, William Yuan, Nils Gehlenborg, Anna Alloni, Danilo Amendola, Antonio Bellasi, Riccardo Bellazzi, Michele Beraghi, Mauro Bucalo, Luca Chiovato, Kelly Cho, Arianna Dagliati, Hossein Estiri, Robert Follett, Noelia García Barrio, David Hanauer, Darren Henderson, Yuk-Lam Ho, John Holmes, Meghan Hutch, Ramakanth Kavuluru, Katie Kirchoff, Jeffrey Klann, Ashok Krishnamurthy, Trang Le, Molei Liu, Ne Hooi Will Loh, Sara Lozano-Zahonero, Yuan Luo, Sarah Maidlow, Adeline Makoudjou, Alberto Malovini, Marcelo Roberto Martins, Bertrand Moal, Michele Morris, Danielle Mowery, Shawn Murphy, Antoine Neuraz, Kee Yuan Ngiam, Marina Okoshi, Gilbert Omenn, Lav Patel, Miguel Pedrera Jiménez, Robson Prudente, Malarkodi Jebathilagam Samayamuthu, Fernando Sanz Vidorreta, Emily Schriver, Petra Schubert, Pablo Serrano Balazote, Byorn Wl Tan, Suzana Tanni, Valentina Tibollo, Shyam Visweswaran, Kavishwar Wagholikar, Zongqi Xia, Daniela Zöller, Isaac Kohane, Tianxi Cai, Andrew South, Gabriel Brat
article
Journal of Medical Internet Research, JMIR Publications, 2021, 23 (10), pp.e31400. ⟨10.2196/31400⟩
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Conference papers

titre
Using an ontological representation of chemotherapy toxicities for guiding information extraction and integration from EHRs
auteur
Alice Rogier, Adrien Coulet, Bastien Rance
article
Medinfo 2021 – 18th World Congress on Medical and Health Informatics, Oct 2021, Virtual conference, Australia
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https://hal.inria.fr/hal-03364585/file/2021-11_alice_rogier_medinfo_317.pdf BibTex
titre
Data Augmentation with Variational Autoencoders and Manifold Sampling
auteur
Clément Chadebec, Stéphanie Allassonnière
article
DALI 2021 : 1st MICCAI Workshop on Data Augmentation, Labeling, and Imperfections, Oct 2021, Strasbourg, France
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-03180775/file/DA_with_VAE_and_manifold_sampling.pdf BibTex
titre
Analysis of the Anatomical Variability of Fetal Brains with Corpus Callosum Agenesis
auteur
Fleur Gaudfernau, Eleonore Blondiaux, Stéphanie Allassonniere
article
MICCAI 2021 – Perinatal, Preterm and Paediatric Image Analysis Workshop, Oct 2021, Strasbourg, France. ⟨10.1007/978-3-030-87735-4_26⟩
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