Bastien Rance

2025

Conference papers

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Valentin Pohyer, Elizabeth Fabre, Stéphane Oudard, Laure Fournier, Bastien Rance. Fake it till you predict it: data augmentation strategies to detect initiation and termination of oncology treatment. Medical Informatics Europe 2025 – Intelligent health systems – From technology to data and knowledge, European Federation for Medical Informatics, May 2025, Glasgow, United Kingdom. ⟨hal-04733731⟩

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2024

Conference papers

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Jong Ho Jhee, Alice Rogier, Dune Giraud, Emma Pinet, Brigitte Sabatier, et al.. Representation and comparison of chemotherapy protocols with ChemoKG and graph embeddings. SWAT4HCLS 2024 – 15th International Semantic Web Applications and Tools for Health Care and Life Sciences Conferenc, Feb 2024, Leiden (NL), Netherlands. ⟨hal-04455155⟩

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Preprints, Working Papers, …

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Maxime Wack, Adrien Coulet, Anita Burgun, Bastien Rance. Enhancing Clinical Data Warehouses with Provenance and Large File Management: The gitOmmix Approach for Clinical Omics Data. 2024. ⟨hal-04687350⟩

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2023

Journal articles

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Emmanuelle Kempf, Morgan Vaterkowski, Damien Leprovost, Nicolas Griffon, David Ouagne, et al.. How to Improve Cancer Patients ENrollment in Clinical Trials From rEal-Life Databases Using the Observational Medical Outcomes Partnership Oncology Extension: Results of the PENELOPE Initiative in Urologic Cancers. JCO Clinical Cancer Informatics, 2023, 7, ⟨10.1200/CCI.22.00179⟩. ⟨hal-04107871⟩

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Conference papers

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Nesrine Bannour, Bastien Rance, Xavier Tannier, Aurélie Névéol. Event-independent temporal positioning: application to French clinical text. 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, Jul 2023, Toronto, Canada. pp.191-205, ⟨10.18653/v1/2023.bionlp-1.16⟩. ⟨hal-04297686⟩

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Nesrine Bannour, Xavier Tannier, Bastien Rance, Aurélie Névéol. Positionnement temporel indépendant des évènements : application à des textes cliniques en français. 18e Conférence en Recherche d’Information et Applications — 16e Rencontres Jeunes Chercheurs en RI — 30e Conférence sur le Traitement Automatique des Langues Naturelles — 25e Rencontre des Étudiants Chercheurs en Informatique pour le Traitement Automatique des Langues, Jun 2023, Paris, France. pp.1-14. ⟨hal-04130201⟩

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2022

Journal articles

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Alexis Guédon, Jean-Baptiste De Freminville, Tristan Mirault, Nassim Mohamedi, Bastien Rance, et al.. Elevated Lipoprotein(a) levels increase Major Adverse Limb Event. European Heart Journal, 2022, 43 (Supplement_2), pp.e20773. ⟨10.1093/eurheartj/ehac544.1980⟩. ⟨hal-03865725⟩

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Nesrine Bannour, Perceval Wajsbürt, Bastien Rance, Xavier Tannier, Aurélie Névéol. Privacy-preserving mimic models for clinical named entity recognition in French. Journal of Biomedical Informatics, 2022, 130, pp.104073. ⟨10.1016/j.jbi.2022.104073⟩. ⟨hal-03655039⟩

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Maxime Wack, David Veyer, Camille Peneau, Sonia Lameiras, William Digan, et al.. viroCapt: A Bioinformatics Pipeline for Identifying Viral Insertion in Human Host Genome. Studies in Health Technology and Informatics, 2022, Studies in Health Technology and Informatics, ⟨10.3233/SHTI220602⟩. ⟨hal-04147996⟩

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Marie-Pierre Revel, Nathanael Beeker, Raphaël Porcher, Léa Jilet, Laure Fournier, et al.. What level of D-dimers can safely exclude pulmonary embolism in COVID-19 patients presenting to the emergency department?. European Radiology, 2022, 32 (4), pp.2704-2712. ⟨10.1007/s00330-021-08377-9⟩. ⟨hal-04249802⟩

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Catherine Conti, Frédéric Pamoukdjian, Thomas Aparicio, Soraya Mebarki, Johanne Poisson, et al.. Overall Survival and Prognostic Factors among Older Patients with Metastatic Pancreatic Cancer: A Retrospective Analysis Using a Hospital Database. Cancers, 2022, 14 (5), pp.1105. ⟨10.3390/cancers14051105⟩. ⟨hal-03825948⟩

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Benjamin Planquette, Lina Khider, Alice Le Berre, Simon Soudet, Gilles Pernod, et al.. Adjusting D-dimer to lung disease extent to exclude Pulmonary Embolism in COVID-19 patients (Co-LEAD). Thrombosis and Haemostasis, 2022, 122 (11), pp.1888-1898. ⟨10.1055/a-1768-4371⟩. ⟨hal-03722805⟩

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Emmanuelle Kempf, Sonia Priou, Guillaume Lamé, Christel Daniel, Ali Bellamine, et al.. Impact of two waves of Sars‐Cov2 outbreak on the number, clinical presentation, care trajectories and survival of patients newly referred for a colorectal cancer: A French multicentric cohort study from a large group of University hospitals. International Journal of Cancer, 2022, 150 (10), pp.1609-1618. ⟨10.1002/ijc.33928⟩. ⟨hal-03519085⟩

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Ivan Lerner, Arnaud Serret-Larmande, Bastien Rance, Nicolas Garcelon, Anita Burgun, et al.. Mining Electronic Health Records for Drugs Associated With 28-day Mortality in COVID-19: Pharmacopoeia-wide Association Study (PharmWAS). JMIR Medical Informatics, 2022, 10 (3), pp.e35190. ⟨10.2196/35190⟩. ⟨hal-03792405v2⟩

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Conference papers

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Nesrine Bannour, Perceval Wajsbürt, Bastien Rance, Xavier Tannier, Aurélie Névéol. Modèles préservant la confidentialité des données par mimétisme pour la reconnaissance d’entités nommées en français. Journée d’étude sur la robustesse des systemes de TAL, ATALA, Nov 2022, Paris, France. ⟨hal-04013420⟩

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Valentin Pohyer, David Baudoin, Laure Fournier, Bastien Rance. Extraction of Tumor Response Criteria in Semi-Structured Imaging Report. MIE 2022, European Federation for Medical Informatics, May 2022, Nice, France. pp.149-150, ⟨10.3233/SHTI220424⟩. ⟨hal-03865993⟩

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Book sections

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Maxime Wack, David Veyer, Camille Peneau, Sonia Lameiras, William Digan, et al.. viroCapt: A Bioinformatics Pipeline for Identifying Viral Insertion in Human Host Genome. Challenges of Trustable AI and Added-Value on Health, 294, IOS Press, pp.834-838, 2022, Studies in Health Technology and Informatics, ⟨10.3233/SHTI220602⟩. ⟨inserm-03772185⟩

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Proceedings

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B. Séroussi, Patrick Weber, Ferdinand Dhombres, Cyril Grouin, Jan-David Liebe, et al.. Challenges of Trustable AI and Added-Value on Health. European Federation for Medical Informatics, Studies in Health Technology and Informatics, 294, 2022, 978-1-64368-285-3. ⟨hal-04003722⟩

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2021

Journal articles

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Hélène Péré, Raphael Vernet, Simon Pernot, Juliette Pavie, Nicolas Robillard, et al.. Episomal HPV16 responsible for aggressive and deadly metastatic anal squamous cell carcinoma evidenced in peripheral blood. Scientific Reports, 2021, 11 (1), pp.4633. ⟨10.1038/s41598-021-84110-2⟩. ⟨hal-03154545⟩

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Yannis Lombardi, Loris Azoyan, Piotr Szychowiak, Ali Bellamine, Guillaume Lemaitre, et al.. External validation of prognostic scores for COVID-19: a multicenter cohort study of patients hospitalized in Greater Paris University Hospitals. Intensive Care Medicine, 2021, 47 (12), pp.1426-1439. ⟨10.1007/s00134-021-06524-w⟩. ⟨hal-03967472v2⟩

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Arnaud Bayle, Debora Basile, Simon Garinet, Bastien Rance, Pierre Laurent-Puig, et al.. Next-Generation Sequencing Targeted Panel in Routine Care for Metastatic Colon Cancers. Cancers, 2021, 13 (22), pp.5750. ⟨10.3390/cancers13225750⟩. ⟨hal-03456558⟩

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Rosy Tsopra, Xose Fernandez, Claudio Luchinat, Lilia Alberghina, Hans Lehrach, et al.. A framework for validating AI in precision medicine: considerations from the European ITFoC consortium. BMC Medical Informatics and Decision Making, 2021, 21 (1), pp.274. ⟨10.1186/s12911-021-01634-3⟩. ⟨inserm-03373629⟩

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Anne-Sophie Jannot, Hector Countouris, Alexis van Straaten, Anita Burgun, Sandrine Katsahian, et al.. Low-income neighbourhood was a key determinant of severe COVID-19 incidence during the first wave of the epidemic in Paris. Journal of Epidemiology and Community Health, 2021, pp.jech-2020-216068. ⟨10.1136/jech-2020-216068⟩. ⟨hal-03335290⟩

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Marie-Agnès Dragon-Durey, Xiaoyi Chen, Amos Kirilovsky, Nadine Ben Hamouda, Carine El Sissy, et al.. Differential association between inflammatory cytokines and multiorgan dysfunction in COVID-19 patients with obesity. PLoS ONE, 2021, 16 (5), pp.e0252026. ⟨10.1371/journal.pone.0252026⟩. ⟨hal-03239731⟩

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Adrien Coulet, Stéphanie Allassonniere, François Angoulvant, Anita Burgun, Xiaoyi Chen, et al.. L’équipe-projet HeKA. Bulletin de l’Association Française pour l’Intelligence Artificielle, 2021, 112, pp.29-32. ⟨hal-03485904⟩

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William Digan, Aurélie Névéol, Antoine Neuraz, Maxime Wack, David Baudoin, et al.. Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites. Journal of the American Medical Informatics Association, 2021, 28 (3), pp.504-515. ⟨10.1093/jamia/ocaa261⟩. ⟨hal-03887189⟩

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Julien Guerin, Yec’Han Laizet, Vincent Le Texier, Laetitia Chanas, Bastien Rance, et al.. OSIRIS: A Minimum Data Set for Data Sharing and Interoperability in Oncology. JCO Clinical Cancer Informatics, 2021, 5, pp.256-265. ⟨10.1200/CCI.20.00094⟩. ⟨hal-03203166⟩

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Laurent Chouchana, Nathanaël Beeker, Nicolas Garcelon, Bastien Rance, Nicolas Paris, et al.. Association of Antihypertensive Agents with the Risk of In-Hospital Death in Patients with Covid-19. Cardiovascular Drugs and Therapy, 2021, ⟨10.1007/s10557-021-07155-5⟩. ⟨hal-03476800⟩

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Laurent Chouchana, Nathanaël Beeker, Nathanaël Beeker, Nicolas Garcelon, Nicolas Garcelon, et al.. Association of Antihypertensive Agents with the Risk of In-Hospital Death in Patients with Covid-19. Cardiovascular Drugs and Therapy, 2021, 36 (3), pp.483-488. ⟨10.1007/s10557-021-07155-5⟩. ⟨hal-04360151⟩

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Vincent Looten, Antoine Neuraz, Nicolas Garcelon, Anita Burgun, Gilles Chatellier, et al.. The Epidemiology of Patients’ Email Addresses in a French University Hospital: Case-Control Study. Journal of Medical Internet Research, 2021, 23 (2), pp.e13992. ⟨10.2196/13992⟩. ⟨hal-03476768⟩

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Jordan Jouffroy, Sarah Feldman, Ivan Lerner, Bastien Rance, Anita Burgun, et al.. Hybrid Deep Learning for Medication-Related Information Extraction From Clinical Texts in French: MedExt Algorithm Development Study. JMIR Medical Informatics, 2021, 9 (3), pp.e17934. ⟨10.2196/17934⟩. ⟨hal-03476758⟩

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Conference papers

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Alice Rogier, Adrien Coulet, Bastien Rance. Using an ontological representation of chemotherapy toxicities for guiding information extraction and integration from EHRs. Medinfo 2021 – 18th World Congress on Medical and Health Informatics, Oct 2021, Virtual conference, Australia. ⟨hal-03364585⟩

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Nesrine Bannour, Aurélie Névéol, Xavier Tannier, Bastien Rance. Traitement Automatique de la Langue et Intégration de Données pour les Réunions de Concertations Pluridisciplinaires en Oncologie. TAL & IA 2021, AfIA; ATALA, Feb 2021, Virtuel – Online, France. ⟨hal-04013495⟩

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2020

Journal articles

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William Digan, Aurélie Névéol, Antoine Neuraz, Maxime Wack, David Baudoin, et al.. Can reproducibility be improved in clinical natural language processing? A study of 7 clinical NLP suites. Journal of the American Medical Informatics Association, 2020, ⟨10.1093/jamia/ocaa261⟩. ⟨hal-03118455⟩

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Sébastien Czernichow, Nathanael Beeker, Claire Rives-Lange, Emmanuel Guerot, Jean‐luc Diehl, et al.. Obesity Doubles Mortality in Patients Hospitalized for Severe Acute Respiratory Syndrome Coronavirus 2 in Paris Hospitals, France: A Cohort Study on 5,795 Patients. Obesity, 2020, 28 (12), pp.2282-2289. ⟨10.1002/oby.23014⟩. ⟨hal-03967463⟩

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Sébastien Czernichow, Nathanael Beeker, Claire Rives‐lange, Emmanuel Guerot, Jean‐luc Diehl, et al.. Obesity Doubles Mortality in Patients Hospitalized for Severe Acute Respiratory Syndrome Coronavirus 2 in Paris Hospitals, France: A Cohort Study on 5,795 Patients. Obesity, 2020, 28 (12), pp.2282-2289. ⟨10.1002/oby.23014⟩. ⟨hal-03677189⟩

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Lina Khider, Nicolas Gendron, Guillaume Goudot, Richard Chocron, Caroline Hauw‐berlemont, et al.. Curative anticoagulation prevents endothelial lesion in COVID‐19 patients. Journal of Thrombosis and Haemostasis, 2020, 18 (9), pp.2391-2399. ⟨10.1111/jth.14968⟩. ⟨hal-03677180⟩

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Malika Smaïl-Tabbone, Bastien Rance. Contributions from the 2019 Literature on Bioinformatics and Translational Informatics. IMIA Yearbook of Medical Informatics, 2020, 29 (01), pp.188-192. ⟨10.1055/s-0040-1702002⟩. ⟨hal-03144080⟩

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Antoine Neuraz, Bastien Rance, Nicolas Garcelon, Leonardo Campillos Llanos, Anita Burgun, et al.. The Impact of Specialized Corpora for Word Embeddings in Natural Langage Understanding.. Studies in Health Technology and Informatics, 2020, 270, pp.432-436. ⟨10.3233/SHTI200197⟩. ⟨hal-04360200⟩

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Antoine Neuraz, Bastien Rance, Nicolas Garcelon, Leonardo Campillos Llanos, Anita Burgun, et al.. The Impact of Specialized Corpora for Word Embeddings in Natural Langage Understanding.. Studies in Health Technology and Informatics, 2020, 270, pp.432-436. ⟨10.3233/SHTI200197⟩. ⟨hal-03476839⟩

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Antoine Neuraz, Ivan Lerner, William Digan, Nicolas Paris, Rosy Tsopra, et al.. Natural Language Processing for Rapid Response to Emergent Diseases: Case Study of Calcium Channel Blockers and Hypertension in the COVID-19 Pandemic. Journal of Medical Internet Research, 2020, 22 (8), pp.e20773. ⟨10.2196/20773⟩. ⟨hal-03738905⟩

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Antoine Neuraz, Ivan Lerner, William Digan, Nicolas Paris, Rosy Tsopra, et al.. Natural Language Processing for Rapid Response to Emergent Diseases: Case Study of Calcium Channel Blockers and Hypertension in the COVID-19 Pandemic. Journal of Medical Internet Research, 2020, 22 (8), pp.e20773. ⟨10.2196/20773⟩. ⟨hal-03119925⟩

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Preprints, Working Papers, …

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Emilie Sbidian, Julie Josse, Guillaume Lemaître, Imke Mayer, Melodie Bernaux, et al.. Hydroxychloroquine with or without azithromycin and in-hospital mortality or discharge in patients hospitalized for COVID-19 infection: a cohort study of 4,642 in-patients in France. 2020. ⟨hal-02995319⟩

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2019

Journal articles

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David Veyer, Maxime Wack, Marion Mandavit, Sonia Garrigou, Stéphane Hans, et al.. HPV circulating tumoral DNA quantification by droplet‐based digital PCR: A promising predictive and prognostic biomarker for HPV‐associated oropharyngeal cancers. International Journal of Cancer, 2019, 147, pp.1222 – 1227. ⟨10.1002/ijc.32804⟩. ⟨hal-04301283⟩

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Vincent Looten, Liliane Kong Win Chang, Antoine Neuraz, Marie-Anne Landau-Loriot, Benoit Vedie, et al.. What can millions of laboratory test results tell us about the temporal aspect of data quality? Study of data spanning 17 years in a clinical data warehouse. Computer Methods and Programs in Biomedicine, 2019, 181, pp.1-20. ⟨10.1016/j.cmpb.2018.12.030⟩. ⟨hal-01978796⟩

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Jennifer Uzan, Hélène Bonsang-Kitzis, Léa Rossi, Bastien Rance, Anne-Sophie Bats, et al.. Prognostic impact of initial tumor load and intraperitoneal disease dissemination patterns in patients with advanced ovarian cancer undergoing complete cytoreductive surgery. EJSO – European Journal of Surgical Oncology, 2019, 45, pp.1619 – 1624. ⟨10.1016/j.ejso.2019.04.011⟩. ⟨hal-03487911⟩

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Antoine Neuraz, Vincent Looten, Bastien Rance, Nicolas Daniel, Nicolas Garcelon, et al.. Do You Need Embeddings Trained on a Massive Specialized Corpus for Your Clinical Natural Language Processing Task?. Studies in Health Technology and Informatics, 2019, 264, pp.1558-1559. ⟨10.3233/SHTI190533⟩. ⟨hal-03962397⟩

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Malika Smail-Tabbone, Bastien Rance. Contributions from the 2018 Literature on Bioinformatics and Translational Informatics. IMIA Yearbook of Medical Informatics, 2019, 28 (01), pp.190-193. ⟨10.1055/s-0039-1677945⟩. ⟨hal-02413623⟩

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Audrey Mansuet-Lupo, Marc Barritault, Marco Alifano, Aurélie Janet-Vendroux, Makmoud Zarmaev, et al.. Proposal for a Combined Histomolecular Algorithm to Distinguish Multiple Primary Adenocarcinomas from Intrapulmonary Metastasis in Patients with Multiple Lung Tumors. Journal of Thoracic Oncology, 2019, 14, pp.844 – 856. ⟨10.1016/j.jtho.2019.01.017⟩. ⟨hal-03486393⟩

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David Veyer, Maxime Wack, Marion Mandavit, Sonia Garrigou, Stéphane Hans, et al.. HPV circulating tumoral DNA quantification by droplet-based digital PCR: a promising predictive and prognostic biomarker for HPV-associated oropharyngeal cancers.. International Journal of Cancer, 2019, 15 (147), pp.1222-1227. ⟨10.1002/ijc.32804⟩. ⟨inserm-02299250⟩

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Conference papers

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Antoine Neuraz, Vincent Looten, Bastien Rance, Nicolas Daniel, Nicolas Garcelon, et al.. Do You Need Embeddings Trained on a Massive Specialized Corpus for Your Clinical Natural Language Processing Task?. 17th World Congress on Medical and Health Informatics (MEDINFO), MCO Congress Group, Aug 2019, Lyon, France. pp.1558-1559, ⟨10.3233/SHTI190533⟩. ⟨hal-03887246⟩

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William Digan, Maxime Wack, Vincent Looten, Antoine Neuraz, Anita Burgun, et al.. Evaluating the impact of text duplications on a corpus of more than 600,000 clinical narratives in a French Hospital. medinfo 2019, Aug 2019, Lyon, France. ⟨hal-02265124⟩

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R Montero Macías, D Veyer, M Mandavit, M Wack, Bastien Rance, et al.. EP364 Prognostic value of ddPCR HPV in lymph nodes of early cervical cancer. ESGO Annual Meeting Abstracts, 2019, Paris, France. pp.A248.1-A248, ⟨10.1136/ijgc-2019-ESGO.423⟩. ⟨hal-03865724⟩

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Poster communications

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Vincent Looten, Antoine Neuraz, Nicolas Garcelon, Anita Burgun, Gilles Chatellier, et al.. Description des courriels des patients pris en charge à l’Hôpital Européen Georges Pompidou, Paris, France. EMOIS 2019, Mar 2019, Nancy, France. 67, pp.S104, 2019. ⟨hal-02069234⟩

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Proceedings

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William Digan, Maxime Wack, Vincent Looten, Antoine Neuraz, Anita Burgun, et al.. Evaluating the Impact of Text Duplications on a Corpus of More than 600,000 Clinical Narratives in a French Hospital.. Studies in Health Technology and Informatics, 264, pp.103-107, 2019, ⟨10.3233/SHTI190192⟩. ⟨hal-03887250⟩

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2018

Journal articles

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Nicolas Garcelon, Antoine Neuraz, Rémi Salomon, Nadia Bahi-Buisson, Jeanne Amiel, et al.. Next generation phenotyping using narrative reports in a rare disease clinical data warehouse. Orphanet Journal of Rare Diseases, 2018, 13 (1), pp.85. ⟨10.1186/s13023-018-0830-6⟩. ⟨hal-03962363⟩

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Nicolas Garcelon, Antoine Neuraz, Rémi Salomon, Nadia Bahi-Buisson, Jeanne Amiel, et al.. Next generation phenotyping using narrative reports in a rare disease clinical data warehouse. Orphanet Journal of Rare Diseases, 2018, 13 (1), pp.85. ⟨10.1186/s13023-018-0830-6⟩. ⟨hal-03868336⟩

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Guillaume Beinse, Pierre-Alexandre Just, Bastien Rance, Brigitte Izac, Franck Letourneur, et al.. Abstract 4609: High-grade TP53-mutated endometrial carcinomas have decreased NRF2 antioxidant activity. Cancer Research, 2018, 78 (13_Supplement), pp.4609-4609. ⟨10.1158/1538-7445.AM2018-4609⟩. ⟨hal-03865719⟩

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Antoine Legras, Marc Barritault, Anne Tallet, Elizabeth Fabre, Alice Guyard, et al.. Validity of Targeted Next-Generation Sequencing in Routine Care for Identifying Clinically Relevant Molecular Profiles in Non–Small-Cell Lung Cancer. Journal of Molecular Diagnostics, 2018, 20 (4), pp.550-564. ⟨10.1016/j.jmoldx.2018.04.002⟩. ⟨hal-03865706⟩

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Nicolas Garcelon, Antoine Neuraz, Rémi Salomon, Hassan Faour, Vincent Benoit, et al.. A clinician friendly data warehouse oriented toward narrative reports: Dr. Warehouse. Journal of Biomedical Informatics, 2018, 80, pp.52-63. ⟨10.1016/j.jbi.2018.02.019⟩. ⟨hal-03865704⟩

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Nicolas Garcelon, Antoine Neuraz, Rémi Salomon, Hassan Faour, Vincent Benoit, et al.. A clinician friendly data warehouse oriented toward narrative reports: Dr. Warehouse. Journal of Biomedical Informatics, 2018, 80, pp.52-63. ⟨10.1016/j.jbi.2018.02.019⟩. ⟨hal-03962360⟩

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Jean-Emmanuel Bibault, Eric Zapletal, Bastien Rance, Philippe Giraud, Anita Burgun. Labeling for Big Data in radiation oncology: The Radiation Oncology Structures ontology. PLoS ONE, 2018, 13 (1), pp.e0191263. ⟨10.1371/journal.pone.0191263⟩. ⟨hal-03865701⟩

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Conference papers

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Karima Rafes, Serge Abiteboul, Sarah Cohen-Boulakia, Bastien Rance. Designing scientific SPARQL queries using autocompletion by snippets. 14th IEEE International Conference on eScience, Oct 2018, Amsterdam, Netherlands. ⟨hal-01874780v2⟩

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2017

Journal articles

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William Digan, Hector Countouris, Marc Barritault, David Baudoin, Pierre Laurent-Puig, et al.. An architecture for genomics analysis in a clinical setting using Galaxy and Docker. GigaScience, 2017, 6 (11), ⟨10.1093/gigascience/gix099⟩. ⟨inserm-01958151⟩

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Jean-Baptiste Escudié, Bastien Rance, Georgia Malamut, Sherine Khater, Anita Burgun, et al.. A novel data-driven workflow combining literature and electronic health records to estimate comorbidities burden for a specific disease: a case study on autoimmune comorbidities in patients with celiac disease. BMC Medical Informatics and Decision Making, 2017, 17 (1), pp.140. ⟨10.1186/s12911-017-0537-y⟩. ⟨inserm-02307407⟩

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Mevyn Nizard, Hélène Roussel, Mariana Diniz, Soumaya Karaki, Thi Tran, et al.. Induction of resident memory T cells enhances the efficacy of cancer vaccine. Nature Communications, 2017, 8 (1), pp.15221. ⟨10.1038/ncomms15221⟩. ⟨hal-04091977⟩

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Mevyn Nizard, Hélène Roussel, Mariana Diniz, Soumaya Karaki, Thi Tran, et al.. Induction of resident memory T cells enhances the efficacy of cancer vaccine. Nature Communications, 2017, 8 (1), pp.15221. ⟨10.1038/ncomms15221⟩. ⟨hal-03865614⟩

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ref_biblio

Yannick Girardeau, Justin Doods, Eric Zapletal, Gilles Chatellier, Christel Daniel, et al.. Leveraging the EHR4CR platform to support patient inclusion in academic studies: challenges and lessons learned. BMC Medical Research Methodology, 2017, 17 (1), pp.37 – 37. ⟨10.1186/s12874-017-0299-3⟩. ⟨hal-01485291⟩

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Poster communications

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Vincent Looten, Chistina Khnaisser, Anita Burgun, Bastien Rance. Storing biological data in i2b2:Extending the representation of laboratory exams beyond the sheer result. i2b2 and tranSMART european meeting, Oct 2017, Paris, France. ⟨hal-01702475⟩

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2016

Journal articles

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William Dunn, Anita Burgun, Marie-Odile Krebs, Bastien Rance. Exploring and visualizing multidimensional data in translational research platforms. Briefings in Bioinformatics, 2016, pp.bbw080. ⟨10.1093/bib/bbw080⟩. ⟨hal-03865659⟩

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2015

Poster communications

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Bryan Brancotte, Bastien Rance, Alain Denise, Sarah Cohen-Boulakia. Interrogation de bases de données biologiques publiques par reformulation de requêtes et classement des résultats avec ConQuR-Bio. JOBIM: Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , pp.35 slides, 2015. ⟨hal-01167840⟩

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2014

Conference papers

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Bryan Brancotte, Bastien Rance, Alain Denise, Sarah Cohen-Boulakia. ConQuR-Bio: Consensus Ranking with Query Reformulation for Biological Data. 10th International Conference, Data Integration in the Life Sciences, Jul 2014, Lisbon, Portugal. pp.128 – 142, ⟨10.1007/978-3-319-08590-6_13⟩. ⟨hal-01091053⟩

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Cyril Grouin, Louise Deleger, Jean-Baptiste Escudié, Grégory Groisy, Anne-Sophie Jeannot, et al.. How to de-identify a large clinical corpus in 10 days. AMIA 2014 Annual Symposium, 2014, Washington DC, United States. ⟨hal-02490236⟩

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2009

Conference papers

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Bastien Rance, Jean-François Gibrat, Christine Froidevaux. An adaptive combination of matchers: application to the mapping of biological ontologies for genome annotation. 6th International Workshop on Data Integration in the Life Sciences 2009, Jul 2009, Manchester, United States. ⟨10.1007/978-3-642-02879-3⟩. ⟨hal-02754368⟩

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Theses

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Bastien Rance. Recherche d’associations séquentielles et alignement d’ontologies biologiques. Bio-informatique [q-bio.QM]. Université Paris Sud – Paris XI, 2009. Français. ⟨NNT : ⟩. ⟨tel-00782556⟩

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