Christophe Pradal

General Informations

Christophe Pradal

Researcher in Plant Modelling and Computer Science
Contact :
  • Tel: 04 67 14 97 94
  • Email: christophe.pradal@inria.fr

Research

Areas of interest

Software for plant modeling
  • OpenALEA: a scalable, modular and open software platform for plant modeling and simulation
  • V-Plants: software components of the Virtual Plant team (evolution of AMAPmod)
Geometrical and topological modeling for plant representation
  • Multiscale plant geometry and topology
  • Scientific visualisation and computer graphics
  • Geometrical surfaces and operators (Sweep, Nurbs, IFS, …)
Scientific Workflow and Software Engineering
  • Highly reusable component based architecture
  • Design patterns in scientific workflow
  • High Performance and distributed Computing
  • Quality assurance (Test, Documentation, GUI, …)

Research themes

  • Computer graphics and geometrical modeling
  • Multiscale data-structures and algorithms
  • Component based architecture for plant modeling
  • Scientific Workflows

Applications

  • Intuitive design methods using sketch based interface (collaboration Evasion, Inria Grenoble)
  • Design methods for complex plant forms and multiscale algorithms for plant growth (collaboration University of Calgary, Canada)
  • Reconstruction of plant shape from laser, video, photograph (collaboration with Galaad, Inria Sophia, and Irit, Toulouse, and Evasion)
  • Study of light interception by trees (collaboration PIAF, Inra Clermont Ferrand and Inra Lusignan)
  • Design of functional-structural plant model of trees (collaboration with AFEF team) and fruits (collaboration with Inra Avignon)

Services to the scientific community

  • Project leader of the OpenAlea platform.
  • Key developper of V-Plants components.

Teaching

  • Yearly one-week training session on ALEA, a plateform for plant modelling.

Selected publications

Publications HAL de Christophe, Pradal

2017

Journal articles

ref_biblio
Alexander Bucksch, Acheampong Atta-Boateng, Akomian Azihou, Dorjsuren Battogtokh, Aly Baumgartner, et al.. Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences. Frontiers in Plant Science, Frontiers, 2017, 8 (900), pp.16. <10.3389/fpls.2017.00900>. <hal-01537909>
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-01537909/file/fpls-08-00900.pdf BibTex
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Mathilde Balduzzi, Brad M. Binder, Alexander Bucksch, Cynthia Chang, Lilan Hong, et al.. Reshaping Plant Biology: Qualitative and Quantitative Descriptors for Plant Morphology. Frontiers in Plant Science, Frontiers, 2017, 8, pp.117. <10.3389/fpls.2017.00117>. <hal-01455754>
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-01455754/file/fpls-08-00117.pdf BibTex
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Christophe Pradal, Simon Artzet, Jerome Chopard, Dimitri Dupuis, Christian Fournier, et al.. InfraPhenoGrid: A scientific workflow infrastructure for Plant Phenomics on the Grid. Future Generation Computer Systems, Elsevier, 2017, 67, pp.341-353. <10.1016/j.future.2016.06.002>. <hal-01336655>
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-01336655/file/infraphenogrid-scientific-workflow_pradal16.pdf BibTex
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Sarah Cohen-Boulakia, Khalid Belhajjame, Olivier Collin, Jérôme Chopard, Christine Froidevaux, et al.. Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. Future Generation Computer Systems, Elsevier, 2017, <10.1016/j.future.2017.01.012>. <hal-01516082>
Accès au texte intégral et bibtex
https://hal.archives-ouvertes.fr/hal-01516082/file/Cohen-Boulakia-etal-reproductibility.pdf BibTex

Preprints, Working Papers, …

ref_biblio
Pierre Fernique, Christophe Pradal. AutoWIG: Automatic Generation of Python Bindings for C++ Libraries. 2017. <hal-01531771>
Accès au bibtex
https://arxiv.org/pdf/1705.11000 BibTex

2016

Conference papers

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Simon Artzet, Nicolas Brichet, Llorenc Cabrera, Tsu-Wei Chen, Jerome Chopard, et al.. Image workflows for high throughput phenotyping platforms. BMVA technical meeting: Plants in Computer Vision, Nov 2016, London, United Kingdom. <https://www.eventbrite.co.uk/e/bmva-technical-meeting-plants-in-computer-vision-registration-24677394752#>. <hal-01459040>
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Christophe Godin, Frédéric Boudon, Christophe Pradal. Reducing algorithm complexity in trees. 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. <http://www.fspma2016.net>. <hal-01398289>
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Pierre Fernique, Anaëlle Dambreville, Jean-Baptiste Durand, Christophe Pradal, Pierre-Eric Lauri, et al.. Characterization of mango tree patchiness using a tree-segmentation/clustering approach. 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. IEEE, pp.68-74, <http://www.fspma2016.net>. <10.1109/FSPMA.2016.7818290>. <hal-01398291>
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Rami Albasha, Christian Fournier, Christophe Pradal, Jorge Alejando Prieto, Gaëtan Louarn, et al.. HydroShoot: a new FSPM model for simulating hydraulic structure and gas-exchange dynamics of complex plants canopies under water deficit. 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016). <http://www.fspma2016.net>. <hal-01396972>
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Anne Schneider, Romain Barillot, Camille Chambon, Christian Fournier, Christophe Pradal, et al.. A functional structural model of wheat leaf metabolism during extension. FSPMA2016, International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, IEEE, Nov 2016, Qingdao, China. FSPMA 2016, International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, 2016. <hal-01437016>
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Tsu-Wei Chen, Christian Fournier, Simon Artzet, Nicolas Brichet, Jérôme Chopard, et al.. Genetic variability in light-related parameters of maize models revealed by linking 3D-reconstruction of plant architecture with light model and phenotyping platform. 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), <www.fspma.net>. <hal-01396935>
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Yann Boursiac, Ana Maria Velez-Cardona, Maria Monica Calvo-Polanco, Didier Felbacq, Christophe Pradal, et al.. How does water flow through the roots. Gordon Research Conferences “Salt & Water Stress in Plants, From Molecules to Crops”, May 2016, Les Diablerets, Switzerland. 2016. <hal-01354210>
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Poster communications

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Christian Fournier, Frédéric Boudon, Michael Chelle, Marc Saudreau, Jérôme Ngao, et al.. Toward the inter-comparison of radiation transfert model for plant modelling application. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, QingDao, China. <http://fspma2016.csp.escience.cn/dct/page/1>. <hal-01400026>
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https://hal.inria.fr/hal-01400026/file/PosterRadiationModelsFinalFSPMA.pdf https://hal.inria.fr/hal-01400026/file/abstractsFSPMA2016_Posters.89.pdf BibTex
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Guillaume Garin, Christian Fournier, Christophe Pradal, Vianney Houlès, Corinne Robert. Using combined virtual plant – pathogen models to compare the influence of wheat architecture on epidemics of two contrasted foliar fungi. FSPMA2016, International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, IEEE, Nov 2016, Qingdao, China. FSPMA 2016, 2016. <hal-01438622>
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Preprints, Working Papers, …

ref_biblio
Alexander Bucksch, Acheampong Atta-Boateng, Akomian Fortune Azihou, Mathilde Balduzzi, Dorjsuren Battogtokh, et al.. Morphological plant modeling: Unleashing geometric and topologic potential within the plant sciences. 2016. <hal-01412691>
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-01412691/file/078832.full.pdf BibTex
ref_biblio
Pierre Fernique, Christophe Pradal. AutoWIG: Automatic generation of Python bindings for C++ libraries. 2016. <hal-01286163>
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2015

Journal articles

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Guillaume Lobet, Michael P. Pound, Julien Diener, Christophe Pradal, Xavier Draye, et al.. Root System Markup Language: toward a unified root architecture description language. Plant Physiology, American Society of Plant Biologists, 2015, 167 (3), pp.617-627. <http://www.plantphysiol.org/content/167/3/617.full>. <10.1104/pp.114.253625>. <hal-01113767>
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https://hal.archives-ouvertes.fr/hal-01113767/file/pp.114.253625.1.full.pdf BibTex

Conference papers

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Christophe Pradal. Multiscale topological and geometrical representation of plant architecture. NimBIOS: Morphological Plant Models, Sep 2015, Knoxville, United States. <http://www.nimbios.org/workshops/WS_plantmorph>. <hal-01245386>
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Christophe Pradal, Christian Fournier, Patrick Valduriez, Sarah Cohen-Boulakia. OpenAlea: Scientific Workflows Combining Data Analysis and Simulation. SSDBM 2015: 27th International Conference on Scientific and Statistical Database Management, Jun 2015, San Diego, United States. <10.1145/2791347.2791365>. <hal-01166298>
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https://hal.archives-ouvertes.fr/hal-01166298/file/openalea-PradalCohen-Boulakia.pdf BibTex
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F. Reyes, D Gianelle, Benoit Pallas, Evelyne Costes, Christophe Pradal, et al.. A multi-scale model to explore carbon allocation in plants. X International Symposium on Modelling in Fruit Research and Orchard Management, Jun 2015, Montpellier, France. pp.285 – 292, 2017, <http://www.actahort.org/books/1160/>. <10.17660/ActaHortic.2017.1160.41>. <hal-01557756>
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Poster communications

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Christian Fournier, Simon Artzet, Jérôme Chopard, Michael Mielewczik, Nicolas Brichet, et al.. Phenomenal: a software framework for model-assisted analysis of high throughput plant phenotyping data. IAMPS 2015 (International Workshop on Image Analysis Methods for the Plant Sciences), Sep 2015, Louvain-la-Neuve, Belgium. <http://www.phytosystems.ulg.ac.be/iamps15/>. <hal-01253627>
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-01253627/file/Phenomenal%40IAMPS.pdf BibTex
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Corinne Robert, Christian Fournier, Mariem Abichou, Bruno Andrieu, Marie-Odile Bancal, et al.. ECHAP : un projet pour identifier les possibilités de réduction de l’utilisation des fongicides en utilisant l’architecture des couverts. 45e Congrès du Groupe Français des Pesticides Devenir et impact des pesticides : verrous à lever et nouveaux enjeux, May 2015, Versailles, France. 145 p., 2015. <hal-01394816>
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2014

Journal articles

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Guillaume Garin, Christian Fournier, Bruno Andrieu, Vianney Houlès, Corinne Robert, et al.. A modelling framework to simulate foliar fungal epidemics using functional–structural plant models. Annals of Botany, Oxford University Press (OUP), 2014, pp.mcu101. <http://aob.oxfordjournals.org/cgi/content/full/mcu101?ijkey=7uTwzZ0aIhTE3fw&keytype=ref>. <10.1093/aob/mcu101>. <hal-01025689>
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2013

Journal articles

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Christophe Pradal, Gaël Varoquaux, Hans Peter Langtangen. Publishing scientific software matters. Journal of Computational Science, Elsevier, 2013, 4 (5), pp.311 – 312. <10.1016/j.jocs.2013.08.001>. <hal-00858663>
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https://hal.inria.fr/hal-00858663/file/paper.pdf BibTex

Conference papers

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Julien Diener, Phillipe Nacry, Christophe Périn, Anne Diévart, Xavier Draye, et al.. An automated image-processing pipeline for high-throughput analysis of root architecture in OpenAlea. Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren. 7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.85-87, 2013, <http://www.metal.fi/fspm2013/proceedings>. <hal-00850814>
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https://hal.inria.fr/hal-00850814/file/DienierNacryPerinDievartDrayeBoundonGaujonGodin2013.pdf BibTex
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Anaëlle Dambreville, Pierre Fernique, Christophe Pradal, Pierre-Eric Lauri, Frédéric Normand, et al.. Deciphering mango tree asynchronisms using Markov tree and probabilistic graphical models. Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren. FSPM2013 – 7th International Workshop on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.210-212, 2013. <hal-00847614>
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https://hal.inria.fr/hal-00847614/file/DambrevilleFerniquePradalLauriNormandGuedonDurand2013.pdf BibTex
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Anaëlle Dambreville, Pierre Fernique, Christophe Pradal, Pierre-Eric Lauri, Frédéric Normand, et al.. Deciphering mango tree asynchronisms using Markov tree and probabilistic graphical models. 7. International Conference on Functional Structure Plant Models, Jun 2013, Saariselkä, Finland. Finnish Society of Forest Science, 371 p., 2013. <hal-01269304>
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Christian Fournier, Christophe Pradal, Mariem Abichou, Bruno Andrieu, Marie-Odile Bancal, et al.. An integrated and modular model for simulating and evaluating how canopy architecture can help reduce fungicide applications. Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren. 7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.345-348, 2013, Proceedings of the 7th International Conference on Functional-Structural Plant Models. <http://www.metal.fi/fspm2013/proceedings>. <hal-00850818>
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-00850818/file/FournierPradaletal2013.pdf BibTex
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Guillaume Garin, Christophe Pradal, Bruno Andrieu, Vianney Houlès, Corinne Robert, et al.. A generic model of interactions between FSPM, foliar pathogens and microclimate. Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren. 7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.339-341, 2013, Proceedings of the 7th International Conference on Functional-Structural Plant Models. <http://www.metal.fi/fspm2013/proceedings>. <hal-00850823>
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-00850823/file/GarinPradalAndrieuHoulesRobertFournier2013.pdf BibTex
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Christophe Pradal, Julien Coste, Frédéric Boudon, Christian Fournier, Christophe Godin. OpenAlea 2.0: Architecture of an integrated modeling environment on the web. Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren. 7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.213, 2013, Proceedings of the 7th International Conference on Functional-Structural Plant Models. <http://www.metal.fi/fspm2013/proceedings>. <hal-00850931>
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-00850931/file/PradalCosteBoudonFournierGodin2013.pdf BibTex

Poster communications

ref_biblio
Guillaume Garin, Christophe Pradal, Bruno Andrieu, Vianney Houlès, Corinne Robert, et al.. A generic model of interactions between FSPM, foliar pathogens, and microclimate. 7. International Conference on Functional Structure Plant Models, Jun 2013, Saariselkä, Finland. Finnish Society of Forest Science, 2013. <hal-01268720>
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2012

Journal articles

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Frédéric Boudon, Christophe Pradal, Thomas Cokelaer, Przemyslaw Prusinkiewicz, Christophe Godin. L-Py: an L-system simulation framework for modeling plant architecture development based on a dynamic language. Frontiers in Plant Science, Frontiers, 2012, 3 (76), doi: 10.3389/fpls.2012.00076. <10.3389/fpls.2012.00076>. <cirad-00703085>
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http://hal.cirad.fr/cirad-00703085/file/Boudon12.pdf BibTex

Conference papers

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Liqi Han, Evelyne Costes, Frédéric Boudon, Thomas Cokelaer, Christophe Pradal, et al.. Investigating the Influence of Geometrical Traits on Light Interception Efficiency of Apple Trees: a Modelling Study with MAppleT. Kang Meng Zhen, Dumont Yves, Guo Yan. International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Oct 2012, Shangai, China. IEEE, 0018-9219, pp.152-159, 2012, Proceedings PMA12 : The Fourth International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications. <hal-00790650>
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https://hal.inria.fr/hal-00790650/file/Han_etal_PMA2012_26-2.pdf BibTex
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Christian Fournier, Christophe Pradal. A Plastic, Dynamic and Reducible 3D Geometric Model for Simulating Gramineous Leaves. Kang Meng Zhen, Dumont Yves, Guo Yan. International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Oct 2012, Shangai, China. IEEE, pp.125-132, 2012, Proceedings PMA12 : The Fourth International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications. <hal-00788140>
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-00788140/file/leafshape.pdf BibTex
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Christian Fournier, Christophe Pradal. A Plastic, Dynamic and Reducible 3D Geometric Model for Simulating Gramineous Leaves. IEEE 4th International Symposium on Plant Growth Modeling, Simulation,, Oct 2012, Shanghai, China. IEEE, 2012 IEEE FOURTH INTERNATIONAL SYMPOSIUM ON PLANT GROWTH MODELING, SIMULATION, VISUALIZATION AND APPLICATIONS (PMA), pp.8, 2012. <hal-01543498>
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Corinne Robert, Mariem Abichou, Bruno Andrieu, Marie-Odile Bancal, Enrique Barriuso Benito, et al.. The ECHAP project: Reducing fungicide use by associating optimal treatment strategies and canopies promoting disease escape. Plant and Canopy Architecture Impact on Disease Epidemiology and Pest Development, Jul 2012, Rennes, France. <hal-01000942>
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2011

Journal articles

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H. K. Mebatsion, Frédéric Boudon, Christophe Godin, Christophe Pradal, M. Genard, et al.. A novel profile based model for virtual representation of quasi-symmetric plant organs. Computers and Electronics in Agriculture, Elsevier, 2011, 75, pp.113-124. <10.1016/j.compag.2010.10.006>. <hal-00657898>
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Conference papers

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Jérôme Chopard, Christophe Pradal, Daniel Barbeau, Thomas Cokelaer, Christophe Godin. Scientific workflow for reusing plant/FSPM models. Chan, F. and Marinova, D. and Anderssen, R.S. MODSIM2011. 19th International Congress on Modelling and Simulation, Dec 2011, Perth, Australia. pp.968-974, 2011, MODSIM2011. 19th International Congress on Modelling and Simulation. <hal-00790635>
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https://hal.inria.fr/hal-00790635/file/MODSIM11_openalea.pdf BibTex
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Liqi Han, Jean-Christophe Soulie, Frédéric Boudon, David Da Silva, Thomas Cokelaer, et al.. Sensitivity analysis of light interception to geometrical traits of Apple trees: an in silico study based on MAppleT Model. 9. International Symposium on modelling in Fruit Research and Orchard management, Jun 2011, Saint-Jean-Sur-Richelieu, Canada. ISHS International Society for Horticultural Science, IX International Symposium on Modelling in Fruit Research and Orchard Management, 1068, 2015, Acta Horticulturae. <hal-01269213>
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Frédéric Boudon, Christophe Pradal. L-Py: L-Systems in Python. EuroSciPy 2011, 2011, Paris, France. 2011. <hal-00828857>
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https://hal.inria.fr/hal-00828857/file/boudon-pradal-lpy-euroscipy11.pdf BibTex
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Ligi Han, Jean-Christophe Soulié, Frédéric Boudon, David Da Silva, Thomas Cokelaer, et al.. Sensitivity Analysis of Light Interception to Geometrical Traits of Apple Trees: an in silico Study based on MAppleT model. 9th International Symposium on Modelling in Fruit Research and Orchard Management, 2011, Saint-Jean-sur-Richelieu, Canada. 2011. <hal-00828858>
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2010

Conference papers

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Youcef Mammeri, Jean Baptiste Burie, Agnes Calonnec, Thomas Cokelaer, Evelyne Costes, et al.. Modelling of the airborne dispersal of a pathogen over a structured vegetal cover. Theodore DeJong and David Da Silva. Functional-Structural Plant Model, Sep 2010, Davis, CA, United States. pp.50-52, 2010, Proceedings of the 6th International Workshop on Functional-Structural Plant Model. <inria-00545609>
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Christophe Pradal, Thomas Cokelaer, Daniel Barbeau, Eric Moscardi, Jérôme Chopard, et al.. Modeling Strategies Using Visual Programming in OpenAlea. DeJong, Theodore and Da Silva, David. 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.101-103, 2010. <hal-00831785>
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Frédéric Boudon, Thomas Cokelaer, Christophe Pradal, Christophe Godin. L-Py, an open L-systems framework in Python. DeJong, Theodore and Da Silva, David. 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.116-119, 2010. <hal-00831780>
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https://hal.inria.fr/hal-00831780/file/boudon-fspm.pdf BibTex
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Christian Fournier, Christophe Pradal, Gaëtan Louarn, Didier Combes, Jean-Christophe Soulié, et al.. Building modular FSPM under OpenAlea: concepts and applications. DeJong, Theodore and Da Silva, David. 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.109-112, 2010. <hal-01192232v2>
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https://hal.inria.fr/hal-01192232/file/fournier-fspm.pdf BibTex
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Jean-Christophe Soulié, Christophe Pradal, Christian Fournier, Delphine Luquet. Feedbacks between plant microclimate and morphogenesis in fluctuating environment: analysis for rice using Ecomeristem model coupled with 3D plant and energy balance computation tools in OpenAlea platform.. DeJong, Theodore and Da Silva, David. 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.123-125, 2010. <hal-00831777>
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Documents associated with scientific events

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Christophe Pradal, Daniel Barbeau, Thomas Cokelaer, Eric Moscardi. VisuAlea, Towards a Scientific Modelling Environment using Visual Programming. EuroSciPy 2010, 2010, Paris, France. 2010. <hal-00831794>
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https://hal.inria.fr/hal-00831794/file/talk.pdf BibTex
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Thomas Cokelaer, Christophe Pradal, Christophe Godin. Introduction to OpenAlea, a platform for plant modeling. 28th International Horticultural Congress, 2010, Lisbon, Portugal. 2010. <hal-00831779>
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https://hal.inria.fr/hal-00831779/file/talk.pdf BibTex

2009

Journal articles

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Christophe Pradal, Frédéric Boudon, Christophe Nouguier, Jérôme Chopard, Christophe Godin. PlantGL: A Python-based geometric library for 3D plant modelling at different scales. Graphical Models, Elsevier, 2009, 71 (1), 1–21, posted-at = 2008-11-04 14:10:07. <10.1016/j.gmod.2008.10.001>. <hal-00850782>
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https://hal.inria.fr/hal-00850782/file/plantgl.pdf BibTex

Conference papers

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Thomas Cokelaer, Christophe Pradal, Christian Fournier. Plant modelling with Python components in OpenAlea. EuroSciPy 2009, 2009, Leipzig, Germany. 2009. <hal-00831801>
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Christian Fournier, Christophe Pradal, Michael Chelle, Frédéric Boudon, Gaëtan Louarn, et al.. Sharing efforts for modelling plant systems: from publications to reusable software components. Comparative Biochemistry and Physiology – Part A: Molecular& Integrative Physiology, 2009, Glasgow, United Kingdom. Elsevier, 153, pp.S222, 2009, Abstracts of the Annual Main Meeting of the Society of Experimental Biology. <10.1016/j.cbpa.2009.04.549>. <hal-00831802>
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2008

Journal articles

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Christophe Pradal, Samuel Dufour-Kowalski, Frédéric Boudon, Christian Fournier, Christophe Godin. OpenAlea: A visual programming and component-based software platform for plant modeling. Functional Plant Biology, CSIRO Publishing, 2008, 35 (10), pp.751-760. <10.1071/FP08084>. <hal-00831811>
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-00831811/file/openalea_paper.pdf BibTex

2007

Conference papers

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Samuel Dufour-Kowalski, Christophe Pradal, Nicolas Dones, Pierre Barbier de Reuille, Frédéric Boudon, et al.. OpenAlea: An open-source platform for the integration of heterogeneous FSPM components. FSPM07 – 5th International Workshop on Functional-Structural Plant Models, Nov 2007, Napier, New Zealand. pp.P36:1-2, 2007. <hal-00831824>
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-00831824/file/openalea-abstractfspm.pdf BibTex
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Sébastien Mondet, Frédéric Boudon, Jean-Christophe Hoelt, Géraldine Morin, Romulus Grigoras, et al.. Compression progressive de modèles de plantes à base de cylindres généralisés. 20eme journées de l’Association Francophone d’Informatique Graphique, 2007, Marne-la-Vallée, France. AFIG, pp.197-204, 2007. <hal-00831815>
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https://hal.inria.fr/hal-00831815/file/mondetBoudon.pdf BibTex
openaleafspm.png
ref_biblio
Christophe Pradal, Samuel Dufour-Kowalski, Frédéric Boudon, Nicolas Donès. The architecture of OpenAlea: A visual programming and component based software for plant modeling. 5th International Workshop on Functional-Structural Plant Models, 2007, Napier, New Zealand. pp.25, 1–4, 2007. <hal-00831829>
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https://hal.inria.fr/hal-00831829/file/openaleafspm.pdf BibTex
fonfreyde3_directNdiffu.png
ref_biblio
David Da Silva, Philippe Balandier, Frédéric Boudon, André Marquier, Christophe Pradal, et al.. Modeling of light transmission under heterogeneous forest canopy: model description and validation. 5th International Workshop on Functional-Structural Plant Models, 2007, Napier, New Zealand. pp.58, 1–4, 2007. <hal-00831822>
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https://hal.inria.fr/hal-00831822/file/DBBMPGS07.pdf BibTex

Directions of work or proceedings

ref_biblio
Christophe Pradal, Samuel Dufour-Kowalski, Frédéric Boudon, Nicolas Dones. The architecture of OpenAlea: a visual programming and component based software for plant modeling. 5. International Workshop on Functional-Structural Plant Models, 2009, Napier, New Zealand. pp.25, 2007. <hal-01189272>
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BibTex
ref_biblio
David Da Silva, Philippe Balandier, Frédéric Boudon, André Marquier, Christophe Pradal, et al.. Modeling of light transmission under heterogeneous forest canopy: model description and validation. 5. International Workshop on Functional-Structural Plant Models, 2007, Napier, New Zealand. pp.58, 2007. <hal-01189299>
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Documents associated with scientific events

openalea_europython07.png
ref_biblio
Christophe Pradal, Samuel Dufour-Kowalski. Openalea – visual programming and component based software for plant modeling. EuroPython 2007, 2007, Vilnius, Lithuania. 2007. <hal-00831823>
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https://hal.inria.fr/hal-00831823/file/openalea_europython07.pdf https://hal.inria.fr/hal-00831823/file/openalea_europython07_abstract.pdf BibTex

Reports

fig18c-shadow-uniform-all.png
ref_biblio
Christophe Pradal, Frédéric Boudon, Christophe Nouguier, Jérôme Chopard, Christophe Godin. PlantGL : a Python-based geometric library for 3D plant modelling at different scales. [Research Report] RR-6367, INRIA. 2007. <inria-00191126v3>
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https://hal.inria.fr/inria-00191126/file/RR-6367.pdf BibTex

2006

Journal articles

ref_biblio
Frédéric Boudon, Christophe Godin, Christophe Pradal, Olivier Puech, Hervé Sinoquet. Estimating the fractal dimension of plants using the two-surface method: An analysis based on 3D-digitized tree foliage. Fractals, World Scientific Publishing, 2006, 14 (3), pp.149-163. <hal-01189287>
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ref_biblio
Frédéric Boudon, Christophe Godin, Christophe Pradal, Olivier Puech, Hervé Sinoquet. Estimating the fractal dimension of plants using the two-surface method: An analysis based on 3D-digitized tree foliage. Fractals, World Scientific Publishing, 2006, 14 (3), pp.149-163. <10.1142/S0218348X06003179>. <hal-00115450>
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Conference papers

ref_biblio
Christophe Pradal, Frédéric Boudon, Nicolas Dones, Jean-Baptiste Durand, Pierre Barbier de Reuille, et al.. OpenAlea : a platform for plant modelling, analysis and simulation. Python Conference Europython, 2006, Genève, Switzerland. 16 p., 2006. <hal-01189325>
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2004

Conference papers

ref_biblio
Christophe Pradal, Nicolas Dones, Christophe Godin, Pierre Barbier de Reuille, Frédéric Boudon, et al.. ALEA: A software for integrating analysis and simulation tools for 3D architecture and ecophysiology. 4. International Workshop on Functional-Structural plant model, Jun 2004, Montpellier, France. 2004. <hal-01189240>
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Documents associated with scientific events

ref_biblio
Christophe Pradal, Nicolas Donès, Christophe Godin, Pierre Reuille, Frédéric Boudon, et al.. ALEA: A software for integrating analysis and simulation tools for 3D architecture and ecophysiology. 4th International Workshop on Functional-Structural Plant Models, 2004, Montpellier, France. pp.406, 2004. <hal-00830075>
Accès au texte intégral et bibtex
https://hal.inria.fr/hal-00830075/file/4thFSPM04_S8Pradal.pdf BibTex