Christian Fournier

General Informations

Christian Fournier

Research Ingeneer in Ecophysiology and Plant Modeling
Contact :
  • Tel: +33 (0)4 99 61 26 37 / (0)4 67 14 97 96
  • Email: christian.fournier@inria.fr

Research

Areas of interest

Analysis and modeling of plants / crops
  • 3D reconstruction of plants and architectural phenotyping of crops
  • Plant morphogenesis
  • Ecophysiology
  • Plant-pathogen interactions
  • Functional-Structural Models
Software for plant modeling
  • Alinea: An Openalea collection of plant and ecophysiological models for simulating cropping system
  • OpenAlea: a scalable, modular and open software platform for plant modeling and simulation

Selected publications

Publications HAL de Christian, Fournier

2018

Journal articles

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Mariem Abichou, Christian Fournier, Tino Dornbusch, Camille Chambon, Benoît De Solan, et al.. Parameterising wheat leaf and tiller dynamics for faithful reconstruction of wheat plants by structural plant models. Field Crops Research, Elsevier, 2018, 218, pp.213-230. 〈10.1016/j.fcr.2018.01.010〉. 〈hal-01708613〉
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Corinne Robert, Guillaume Garin, Mariem Abichou, Vianney Houlès, Christophe Pradal, et al.. Plant architecture and foliar senescence impact the race between wheat growth and Zymoseptoria tritici epidemics. Annals of Botany, Oxford University Press (OUP), 2018, 121, pp.975-989. 〈10.1093/aob/mcx192〉. 〈hal-01766697〉
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Poster communications

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Christophe Gigot, David Claessen, Guillaume Garin, Christian Fournier, Christophe Pradal, et al.. Using crop-pathogen modeling to identify plant traits to control Zymoseptoria tritici epidemics on wheat. EUCARPIA Cereal section Meeting “Breeeding cereals for sustainable agriculture, Mar 2018, Clermont-Ferrand, France. 2018. 〈hal-01800385〉
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2017

Journal articles

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Shouyang Liu, Frédéric Baret, Mariem Abichou, Frédéric Boudon, Samuel Thomas, et al.. Estimating wheat green area index from ground-based LiDAR measurement using a 3D canopy structure model. Agricultural and Forest Meteorology, Elsevier Masson, 2017, 247, pp.12 – 20. 〈10.1016/j.agrformet.2017.07.007〉. 〈hal-01573077〉
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Nicolas Brichet, Christian Fournier, Olivier Turc, Olivier Strauss, Simon Artzet, et al.. A robot-assisted imaging pipeline for tracking the growths of maize ear and silks in a high-throughput phenotyping platform. Plant Methods, BioMed Central, 2017, 13 (1), pp.12. 〈10.1186/s13007-017-0246-7〉. 〈hal-01631186〉
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https://hal.inria.fr/hal-01631186/file/Brichet_et_al-2017-Plant_Methods.pdf BibTex
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Christophe Pradal, Simon Artzet, Jerome Chopard, Dimitri Dupuis, Christian Fournier, et al.. InfraPhenoGrid: A scientific workflow infrastructure for Plant Phenomics on the Grid. Future Generation Computer Systems, Elsevier, 2017, 67, pp.341-353. 〈10.1016/j.future.2016.06.002〉. 〈hal-01336655〉
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https://hal.inria.fr/hal-01336655/file/infraphenogrid-scientific-workflow_pradal16.pdf BibTex
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Sébastien Lacube, Christian Fournier, Carine Palaffre, Emilie J. Millet, Francois Tardieu, et al.. Distinct controls of leaf widening and elongation by light and evaporative demand in maize. Plant, Cell and Environment, Wiley, 2017, 40 (9), pp.2017-2028. 〈10.1111/pce.13005〉. 〈hal-01548684〉
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2016

Journal articles

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Llorenç Cabrera-Bosquet, Christian Fournier, Nicolas Brichet, Claude Welcker, Benoît Suard, et al.. High-throughput estimation of incident light, light interception and radiation-use efficiency of thousands of plants in a phenotyping platform. New Phytologist, Wiley, 2016, 212 (1), pp.269-281. 〈10.1111/nph.14027〉. 〈hal-01576907〉
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https://hal.archives-ouvertes.fr/hal-01576907/file/Cabrera-Bosquet-NP-2016-manuscript.pdf BibTex

Conference papers

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Simon Artzet, Nicolas Brichet, Llorenc Cabrera, Tsu-Wei Chen, Jerome Chopard, et al.. Image workflows for high throughput phenotyping platforms. BMVA technical meeting: Plants in Computer Vision, Nov 2016, London, United Kingdom. 〈https://www.eventbrite.co.uk/e/bmva-technical-meeting-plants-in-computer-vision-registration-24677394752#〉. 〈hal-01459040〉
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Christian Fournier, Anne Danthony, Stéphanie Pointet, Benjamin Perriot, Mariem Abichou, et al.. Modeling and simulating the distribution of fungicide among leaves in wheat. FSPMA2016 – International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, IEEE, Nov 2016, Qingdao, China. FSPMA 2016, International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, 2016. 〈hal-01400029v2〉
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Christian Fournier, Frédéric Boudon, Michaël Chelle, Marc Saudreau, Jérome Ngao, et al.. Toward the inter-comparison of radiation transfert model for plant modelling application. FSPMA2016, International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, IEEE, Nov 2016, Qingdao, China. FSPMA 2016, International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, 2016. 〈hal-01543439〉
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Anne Schneider, Romain Barillot, Camille Chambon, Christian Fournier, Christophe Pradal, et al.. A functional structural model of wheat leaf metabolism during extension. FSPMA2016, International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, IEEE, Nov 2016, Qingdao, China. FSPMA 2016, International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, 2016. 〈hal-01437016〉
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Tsu-Wei Chen, Christian Fournier, Simon Artzet, Nicolas Brichet, Jérôme Chopard, et al.. Genetic variability in light-related parameters of maize models revealed by linking 3D-reconstruction of plant architecture with light model and phenotyping platform. 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), 〈www.fspma.net〉. 〈hal-01396935〉
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Rami Albasha, Christian Fournier, Christophe Pradal, Jorge Alejando Prieto, Gaëtan Louarn, et al.. HydroShoot: a new FSPM model for simulating hydraulic structure and gas-exchange dynamics of complex plants canopies under water deficit. 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016). 〈http://www.fspma2016.net〉. 〈hal-01396972〉
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Christian Fournier, Anne Danthony, Benjamin Perriot, Mariem Abichou, Samuel Poidevin, et al.. Simulation of the effects of leaf bending dynamics on fungicide deposit on individual leaves of wheat using a 3D architectural model. FSPMA2016, International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, IEEE, 2016, Qingdao, China. FSPMA 2016, International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, 2016. 〈hal-01440031〉
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Poster communications

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Shouyang Liu, Frederic Baret, Frédéric Boudon, Christian Fournier, Bruno Andrieu, et al.. Estimating canopy characteristics from ground-based LiDAR measurement assisted with 3D Adel-Wheat model. FSPMA2016, International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, IEEE, Nov 2016, Qingdao, China. 2016. 〈hal-01438612〉
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Shouyang Liu, Frédéric Baret, Frédéric Boudon, Christian Fournier, Bruno Andrieu, et al.. Estimating canopy characteristics from ground-based LiDAR measurement assisted with 3D AdelWheat model. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, QingDao, China. 〈http://fspma2016.csp.escience.cn/dct/page/1〉. 〈hal-01400001〉
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Guillaume Garin, Christian Fournier, Christophe Pradal, Vianney Houlès, Corinne Robert. Using combined virtual plant – pathogen models to compare the influence of wheat architecture on epidemics of two contrasted foliar fungi. FSPMA2016, International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, IEEE, Nov 2016, Qingdao, China. FSPMA 2016, 2016. 〈hal-01438622〉
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Christian Fournier, Frédéric Boudon, Michael Chelle, Marc Saudreau, Jérôme Ngao, et al.. Toward the inter-comparison of radiation transfert model for plant modelling application. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, QingDao, China. 〈http://fspma2016.csp.escience.cn/dct/page/1〉. 〈hal-01400026〉
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https://hal.inria.fr/hal-01400026/file/PosterRadiationModelsFinalFSPMA.pdf https://hal.inria.fr/hal-01400026/file/abstractsFSPMA2016_Posters.89.pdf BibTex

2015

Conference papers

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Mariem Abichou, Christian Fournier, Tino Dornbusch, Camille Chambon, David Gouache, et al.. Parameterizing patterns in wheat architecture to simulate the 3D dynamics of wheat crops. IWIW2015: International Wheat Innovation Workshop, Nov 2015, Clermont-Ferrand, France. 1 p., 2015. 〈hal-01429101〉
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Christophe Pradal, Christian Fournier, Patrick Valduriez, Sarah Cohen-Boulakia. OpenAlea: Scientific Workflows Combining Data Analysis and Simulation. SSDBM 2015: 27th International Conference on Scientific and Statistical Database Management, Jun 2015, San Diego, United States. 〈10.1145/2791347.2791365〉. 〈hal-01166298〉
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https://hal.archives-ouvertes.fr/hal-01166298/file/openalea-PradalCohen-Boulakia.pdf BibTex
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Corinne Robert, Christian Fournier, Mariem Abichou, Bruno Andrieu, Marie-Odile Bancal, et al.. ECHAP : un projet pour identifier les possibilités de réduction de l’utilisation des fongicides en utilisant l’architecture des couverts. 45e Congrès du Groupe Français des Pesticides Devenir et impact des pesticides : verrous à lever et nouveaux enjeux, May 2015, Versailles, France. 2 p., 2016. 〈hal-01595503〉
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Poster communications

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Llorenç Cabrera Bosquet, Christian Fournier, Claude Welcker, Benoit Suard, Francois Tardieu. High throughput estimation of incident light, light interception and radiation-use efficiency of thousands of plants in a phenotyping platform. EPPN Plant Phenotyping Symposium, Nov 2015, Barcelona, Spain. 2015. 〈hal-01229560〉
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https://hal.archives-ouvertes.fr/hal-01229560/file/poster_Cabrera-et-al_2015.pdf BibTex
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Llorenç Cabrera Bosquet, Nicolas Brichet, Christian Fournier, Antonin Grau, Jonathan Mineau, et al.. PHENOARCH, a multiscale phenotyping platform for plant architecture, growth rate, water use efficiency and radiation use efficiency. EPPN Plant Phenotyping Symposium, Nov 2015, Barcelona, Spain. 2015. 〈hal-01229559〉
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Christian Fournier, Simon Artzet, Jérôme Chopard, Michael Mielewczik, Nicolas Brichet, et al.. Phenomenal: a software framework for model-assisted analysis of high throughput plant phenotyping data. IAMPS 2015 (International Workshop on Image Analysis Methods for the Plant Sciences), Sep 2015, Louvain-la-Neuve, Belgium. 〈http://www.phytosystems.ulg.ac.be/iamps15/〉. 〈hal-01253627〉
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https://hal.inria.fr/hal-01253627/file/Phenomenal%40IAMPS.pdf BibTex
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Llorenç Cabrera Bosquet, Nicolas Brichet, Christian Fournier, Antonin Grau, Jonathan Mineau, et al.. PHENOARCH, a multiscale phenotyping platform for plant architecture, growth rate, water use efficiency and radiation use efficiency. Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France. 2015. 〈hal-01595406〉
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Corinne Robert, Christian Fournier, Mariem Abichou, Bruno Andrieu, Marie-Odile Bancal, et al.. ECHAP : un projet pour identifier les possibilités de réduction de l’utilisation des fongicides en utilisant l’architecture des couverts. 45e Congrès du Groupe Français des Pesticides Devenir et impact des pesticides : verrous à lever et nouveaux enjeux, May 2015, Versailles, France. 145 p., 2015. 〈hal-01394816〉
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Reports

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Corinne Robert, Christian Fournier, Carole Bedos, David Gouache, Benjamin Perriot. ECHAP « L’architecture des couverts végétaux : un levier pour réduire l’utilisation des fongicides ? ». [Rapport de recherche] 1879/10, INRA. 2015, pp.43. 〈hal-01253658〉
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https://hal.inria.fr/hal-01253658/file/ECHAP-RF-APR2009_2011-RapportScientifique.pdf BibTex

2014

Journal articles

PeaWheat.png
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Romain Barillot, Abraham J. Escobar-Gutierrez, Christian Fournier, Pierre Huynh, Didier Combes. Assessing the effects of architectural variations on light partitioning within virtual wheat – pea mixtures. Annals of Botany, Oxford University Press (OUP), 2014, Special Issue: Functional-Structural Plant Modelling, 114 (4), pp.13. 〈10.1093/aob/mcu099〉. 〈hal-01095288〉
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https://hal.inria.fr/hal-01095288/file/LPea-AdelW_R2.pdf BibTex
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Guillaume Garin, Christian Fournier, Bruno Andrieu, Vianney Houlès, Corinne Robert, et al.. A modelling framework to simulate foliar fungal epidemics using functional–structural plant models. Annals of Botany, Oxford University Press (OUP), 2014, pp.mcu101. 〈http://aob.oxfordjournals.org/cgi/content/full/mcu101?ijkey=7uTwzZ0aIhTE3fw&keytype=ref〉. 〈10.1093/aob/mcu101〉. 〈hal-01025689〉
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2013

Conference papers

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Mariem Abichou, Christian Fournier, Tino Dornbusch, Camille Chambon, Rim Baccar, et al.. Re-parametrisation of Adel-wheat allows reducing the experimental effort to simulate the 3D development of winter wheat. 7. International Conference on Functional Structure Plant Models, Jun 2013, Saariselkä, Finland. Finnish Society of Forest Science, 2013. 〈hal-01512123〉
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https://hal.archives-ouvertes.fr/hal-01512123/file/Abichou-FSPM2013_%7B6DD6F381-8861-414A-9776-D92372EA15F8%7D.pdf BibTex
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Christophe Pradal, Julien Coste, Frédéric Boudon, Christian Fournier, Christophe Godin. OpenAlea 2.0: Architecture of an integrated modeling environment on the web. Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren. 7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.213, 2013, Proceedings of the 7th International Conference on Functional-Structural Plant Models. 〈http://www.metal.fi/fspm2013/proceedings〉. 〈hal-00850931〉
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https://hal.inria.fr/hal-00850931/file/PradalCosteBoudonFournierGodin2013.pdf BibTex
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Christian Fournier, Christophe Pradal, Mariem Abichou, Bruno Andrieu, Marie-Odile Bancal, et al.. An integrated and modular model for simulating and evaluating how canopy architecture can help reduce fungicide applications. Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren. 7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.345-348, 2013, Proceedings of the 7th International Conference on Functional-Structural Plant Models. 〈http://www.metal.fi/fspm2013/proceedings〉. 〈hal-00850818〉
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https://hal.inria.fr/hal-00850818/file/FournierPradaletal2013.pdf BibTex
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Guillaume Garin, Christophe Pradal, Bruno Andrieu, Vianney Houlès, Corinne Robert, et al.. A generic model of interactions between FSPM, foliar pathogens and microclimate. Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren. 7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.339-341, 2013, Proceedings of the 7th International Conference on Functional-Structural Plant Models. 〈http://www.metal.fi/fspm2013/proceedings〉. 〈hal-00850823〉
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https://hal.inria.fr/hal-00850823/file/GarinPradalAndrieuHoulesRobertFournier2013.pdf BibTex
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Mariem Abichou, Christian Fournier, Tino Dornbusch, Camille Chambon, Rim Baccar, et al.. Re-parametrisation of Adel-wheat allows reducing the experimental effort to simulate the 3D development of winter wheat. Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren. 7th International Conference on Functional-Structural Plant Models, Jun 2013, Saariselka, Finland. pp.304-306, 2013. 〈hal-00851389〉
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https://hal.archives-ouvertes.fr/hal-00851389/file/FSPM2013_abstract_Abichou.pdf BibTex

Poster communications

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Llorenç Cabrera Bosquet, Christian Fournier, Claude Welcker, Benoit Suard, Francois Tardieu. Genetic variation of radiation-use efficiency and water use efficiency under water deficit in a high-throughput phenotyping platform. Interdrought IV Conference, Sep 2013, Perth Australia. 2013. 〈hal-01595639〉
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Junqi Zhu, Bruno Andrieu, Vos Jan, Wopke Van Der Werf, Christian Fournier, et al.. Simulating maize plasticity in leaf appearance and size using regulation rules. 7. International Conference on Functional Structure Plant Models, Jun 2013, Saariselkä, Finland. Finnish Society of Forest Science, 2013. 〈hal-01543497〉
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Romain Barillot, Christian Fournier, Pierre Huynh, Abraham Escobar Gutiérrez, Didier Combes. How do variations of architectural parameters affect light partitioning within wheat – pea mixtures? A simulation study based on a virtual plant approach. 7. International Conference on Functional Structure Plant Models, Jun 2013, Saariselkä, Finland. Finnish Society of Forest Science, 7. International Conference on Functional Structure Plant Models, 2013. 〈hal-01299599〉
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https://hal.archives-ouvertes.fr/hal-01299599/file/Barillot-FSPM2013_%7B94A7BDA5-9931-461D-9A12-30315D785F70%7D.pdf BibTex
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Guillaume Garin, Christophe Pradal, Bruno Andrieu, Vianney Houlès, Corinne Robert, et al.. A generic model of interactions between FSPM, foliar pathogens, and microclimate. 7. International Conference on Functional Structure Plant Models, Jun 2013, Saariselkä, Finland. Finnish Society of Forest Science, 2013. 〈hal-01268720〉
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Christophe Pradal, Julien Coste, Frédéric Boudon, Christian Fournier, Christophe Godin. OpenAlea 2.0: Architecture of an integrated modeling environment on the web. 7. International Conference on Functional Structure Plant Models, Jun 2013, Saariselkä, Finland. Finnish Society of Forest Science, 2013. 〈hal-01578851〉
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2012

Journal articles

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Romain Barillot, Didier Combes, Valérie Chevalier, Christian Fournier, Abraham J. Escobar-Gutiérrez. How does pea architecture influence light sharing in virtual wheat-pea mixtures? A simulation study based on pea genotypes with contrasting architectures. AoB Plants, Oxford University Press 2012, 2012, pls038+. 〈10.1093/aobpla/pls038〉. 〈hal-00941201〉
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Conference papers

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Bruno Andrieu, Corinne Robert, Christian Fournier. Des outils pour simuler l’influence de l’architecture des plantes sur les épidémies : modèle Blé Septoriose. Séminaire RMT Modélisation “Architecture du couvert végétal : Un levier pour limiter le développement des épidémies ?”, Nov 2012, Paris, France. 17 diapos powerpoint. 〈hal-01004347〉
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Christian Fournier, Christophe Pradal. A Plastic, Dynamic and Reducible 3D Geometric Model for Simulating Gramineous Leaves. Kang Meng Zhen, Dumont Yves, Guo Yan. International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Oct 2012, Shangai, China. IEEE, pp.125-132, 2012, Proceedings PMA12 : The Fourth International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications. 〈hal-01543498v2〉
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https://hal.inria.fr/hal-01543498/file/leafshape.pdf BibTex
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Llorenç Cabrera Bosquet, Christian Fournier, Claude Welcker, Francois Tardieu. Extracting reproducible information from a phenotyping platform requires model-assisted dissection of the phenotype. China – EU Workshop on Phenotypic Profiling and Technology Transfer on Crop Breeding, Sep 2012, Barcelone, Spain. 2012. 〈hal-01595656〉
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Pierre Casadebaig, Michel Langlais, Christian Fournier, Robert Faivre. Design steps of a generic model to simulate air borne diseases as a function of crop architecture project. ECA International Conference on “Plant and Canopy Architecture Impact on Disease Epidemiology and Pest Development”, Jul 2012, Rennes, France. 2012. 〈hal-01543500〉
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Corinne Robert, Mariem Abichou, Bruno Andrieu, Marie-Odile Bancal, Enrique Barriuso Benito, et al.. The ECHAP project: Reducing fungicide use by associating optimal treatment strategies and canopies promoting disease escape. Plant and Canopy Architecture Impact on Disease Epidemiology and Pest Development, Jul 2012, Rennes, France. 〈hal-01000942〉
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2011

Journal articles

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Rim Baccar, Christian Fournier, Tino Dornbusch, Bruno Andrieu, David Gouache, et al.. Modelling the effect of wheat canopy architecture as affected by sowing density on Septoria tritici epidemics using a coupled epidemic-virtual plant model. Annals of Botany, Oxford University Press (OUP), 2011, 108 (6), pp.1179-1194. 〈10.1093/aob/mcr126〉. 〈hal-00941163〉
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Tino Dornbusch, Jillian Watt, Rim Baccar, Christian Fournier, Bruno Andrieu. A comparative analysis of leaf shape of wheat, barley and maize using an empirical shape model. Annals of Botany, Oxford University Press (OUP), 2011, 107 (5), pp.865-873. 〈10.1093/aob/mcq181〉. 〈hal-00828860〉
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Tino Dornbusch, Rim Baccar, Jillian Watt, Jonathan Hillier, Jessica Bertheloot, et al.. Plasticity of winter wheat modulated by sowing date, plant population density and nitrogen fertilisation: Dimensions and size of leaf blades, sheaths and internodes in relation to their position on a stem. Field Crops Research, Elsevier, 2011, 121 (1), pp.116 – 124. 〈10.1016/j.fcr.2010.12.004〉. 〈hal-00941171〉
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2010

Journal articles

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David Gouache, Philippe Gate, Corinne Robert, Christian Fournier. Septoriose du blé tendre : Décaler les semis sans entamer le potentiel de rendement ?. Perspectives Agricoles, 2010, pp.40-42. 〈hal-01192316〉
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Conference papers

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Thierry Simonneau, Christian Fournier, Francois Tardieu, Denis Vile, Angélique Christophe, et al.. Combining multiple modeling approaches to design plant ideotypes for specific climates. International Workshop on Mathematical Modeling of Plant Development, Sep 2010, Columbus, United States. 2010. 〈hal-01595045〉
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Jessica Bertheloot, Mariem Abichou, Christian Fournier, Bruno Andrieu. Light-nitrogen relationships within plant canopies analysed using in silico reconstruction of wheat crops. 6. International Workshop, Sep 2010, Davis, United States. University of California, 2010. 〈hal-01192238〉
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Rim Baccar, Christian Fournier, Tino Dornbusch, Bruno Andrieu, Corinne Robert. Assessing the effect of canopy architecture as affected by sowing density on epidemics using a virtual wheat plant model coupled with a Septoria tritici epidemic model. 6. International Workshop, Sep 2010, Davis, United States. University of California, 2010. 〈hal-01192237〉
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Alienor Jeliazkov, Christian Fournier, Corinne Robert. Using a functional-structural plant model to identify important infection-cycle steps for epidemics. 6. International Workshop, Sep 2010, Davis, United States. University of California, 2010. 〈hal-01192254〉
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Tino Dornbusch, Rim Baccar, Mariem Abichou, Christian Fournier, Bruno Andrieu. Plasticity of wheat architecture in response to sowing date and plant population density described with the 3D plant model ADEL wheat. 11. ESA Congress, Aug 2010, Montpellier, France. Agropolis International Editions, 2010. 〈hal-01192271〉
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Alienor Jeliazkov, Christian Fournier, Corinne Robert. Does the complexity of a plant-pathogen model influence the identification of infection-cycle steps that are decisive for epidemics?. 11. ESA Congress, Aug 2010, Montpellier, France. Agropolis International Editions, 2010. 〈hal-01192261〉
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Jessica Bertheloot, Mariem Abichou, Christian Fournier, Bruno Andrieu. Light-nitrogen relationships within plant canopies analysed using in silico reconstruction of wheat crops. DeJong, Theodore and Da Silva, David. 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.80-82, 2010. 〈hal-00831781〉
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Rim Baccar, Christian Fournier, Tino Dornbusch, Bruno Andrieu, Corinne Robert. Assessing the effect of canopy architecture as affected by sowing density on epidemics using a virtual wheat plant model coupled with a Septoria tritici epidemic model. DeJong, Theodore and Da Silva, David. 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.58-60, 2010. 〈hal-00831774〉
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Christian Fournier, Christophe Pradal, Gaëtan Louarn, Didier Combes, Jean-Christophe Soulié, et al.. Building modular FSPM under OpenAlea: concepts and applications. DeJong, Theodore and Da Silva, David. 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.109-112, 2010. 〈hal-01192232v2〉
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https://hal.inria.fr/hal-01192232/file/fournier-fspm.pdf BibTex
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Jean-Christophe Soulié, Christophe Pradal, Christian Fournier, Delphine Luquet. Feedbacks between plant microclimate and morphogenesis in fluctuating environment: analysis for rice using Ecomeristem model coupled with 3D plant and energy balance computation tools in OpenAlea platform.. DeJong, Theodore and Da Silva, David. 6th International Workshop on Functional-Structural Plant Models, 2010, Davis, CA, United States. pp.123-125, 2010. 〈hal-00831777〉
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2009

Journal articles

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Bruno Andrieu, Jessica Bertheloot, Christian Fournier, Pierre Martre. A functional-structural model of nitrogen distribution within the wheat culm during grain filling. Comparative Biochemistry and Physiology – Part A: Molecular and Integrative Physiology, Elsevier, 2009, 153 (2), pp.S220-S220. 〈10.1016/j.cbpa.2009.04.543〉. 〈hal-00964416〉
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Corinne Robert, Christian Fournier, William Lee, Bruno Andrieu, David Gouache, et al.. Does canopy architecture play a role in the effect of plant density and sowing date on epidemics of Septoria tritici in wheat crops?. Comparative Biochemistry and Physiology – Part A: Molecular and Integrative Physiology, Elsevier, 2009, 153 (2), pp.S224-S225. 〈10.1016/j.cbpa.2009.04.558〉. 〈hal-01192190〉
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Conference papers

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D. Gouache, P. Gate, Corinne Robert, Christian Fournier. Date de semis, pression de septoriose et potentiel de rendement: De la compréhension à la préconisation opérationnelle. 9. Conférence Internationale, Dec 2009, Tours, France. Association Française de Protection des Plantes, 2009. 〈hal-01192166〉
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Corinne Robert, Bruno Andrieu, Christian Fournier, D. Gouache, P. Gate, et al.. Septo3D: un modèle pour analyser les effets de la structure des couverts de blé sur les épidémies de septoriose. 9. Conférence internationale, Dec 2009, Tours, France. Association Française de Protection des Plantes, 2009. 〈hal-01192172〉
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D. Gouache, Bruno Andrieu, Marie-Odile Bancal, Pierre Bancal, Michaël Chelle, et al.. Modélisation des interactions épidémie – couvert végétal : De la recherche à la mise au point d’outils opérationnels pour la protection intégrée des cultures. 9. Conférence Internationale, Dec 2009, Tours, France. Association Française de Protection des Plantes, 2009. 〈hal-01192198〉
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Tino Dornbusch, Jillian Watt, Rim Baccar, Christian Fournier, Bruno Andrieu. Towards a quantitative evaluation of cereal lamina shape using an empirical shape model. PMA 2009 3rd International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Nov 2009, Beijing, China. IEEE Computer Society, 454 p., 2010. 〈hal-01173240〉
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Tino Dornbusch, Jillian Watt, Rim Baccar, Christian Fournier, Bruno Andrieu. Towards a quantitative evaluation of cereal lamina shape using an empirical shape model. PMA 2009 3rd International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Nov 2009, Beijing, China. IEEE Computer Society, 454 p., 2010. 〈hal-01173241〉
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Francois Tardieu, Claude Welcker, Christian Fournier, Bertrand Muller, Thierry Simonneau, et al.. High throughput phenotyping and plant modelling : two legs for combined physiological and genetic approaches. EPSO workshop on plant phenotyping, Nov 2009, Jülich, Germany. 2009. 〈hal-01190043〉
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Bruno Andrieu, Jessica Bertheloot, Christian Fournier, Pierre Martre. A functional-structural model of nitrogen distribution within the wheat culm during grain filling. Annual Meeting of the Society-for-Experimental-Biology, Jun 2009, Glasgow, United Kingdom. 〈hal-00964411〉
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Christian Fournier, Christophe Pradal, Michael Chelle, Frédéric Boudon, Gaëtan Louarn, et al.. Sharing efforts for modelling plant systems: from publications to reusable software components. Comparative Biochemistry and Physiology – Part A: Molecular& Integrative Physiology, 2009, Glasgow, United Kingdom. Elsevier, 153, pp.S222, 2009, Abstracts of the Annual Main Meeting of the Society of Experimental Biology. 〈10.1016/j.cbpa.2009.04.549〉. 〈hal-00831802〉
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Thomas Cokelaer, Christophe Pradal, Christian Fournier. Plant modelling with Python components in OpenAlea. EuroSciPy 2009, 2009, Leipzig, Germany. 2009. 〈hal-00831801〉
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Book sections

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Jessica Bertheloot, Bruno Andrieu, Christian Fournier, Pierre Martres. Modelling Nitrogen Distribution in Virtual Plants, as Exemplified by Wheat Culm During Grain Filling. Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications: proceedings, 9-13 November 2009, Beijing, China, IEEE Computer Society, 2009, 978-0-7695-3988-1. 〈10.1109/PMA.2009.67〉. 〈hal-01189547〉
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2008

Journal articles

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Gaëtan Louarn, Karine Chenu, Christian Fournier, Bruno Andrieu, Catherine Giauffret. Relative contributions of light interception and radiation use efficiency to the reduction of maize productivity under cold temperatures. Functional Plant Biology, CSIRO Publishing, 2008, 35 (10), pp.885-899. 〈10.1071/FP08061〉. 〈hal-01192233〉
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Corinne Robert, Christian Fournier, Bruno Andrieu, Bertrand Ney. Coupling a 3D virtual wheat (Triticum aestivum) plant model with a Septoria tritici epidemic model (Septo3D): a new approach to investigate plant-pathogen interactions linked to canopy architecture. Functional Plant Biology, CSIRO Publishing, 2008, 35 (10), pp.997-1013. 〈10.1071/FP08066〉. 〈hal-01192058〉
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Christophe Pradal, Samuel Dufour-Kowalski, Frédéric Boudon, Christian Fournier, Christophe Godin. OpenAlea: A visual programming and component-based software platform for plant modeling. Functional Plant Biology, CSIRO Publishing, 2008, 35 (10), pp.751-760. 〈10.1071/FP08084〉. 〈hal-00831811〉
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https://hal.inria.fr/hal-00831811/file/openalea_paper.pdf BibTex
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Jessica Bertheloot, Bruno Andrieu, Christian Fournier, Pierre Martres. A process-based model to simulate nitrogen distribution in wheat (Triticum aestivum) during grain-filling. Functional Plant Biology, CSIRO Publishing, 2008, 35 (10), pp.781-796. 〈10.1071/FP08064〉. 〈hal-01189379〉
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Conference papers

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Vincent Guérin, Rachid Boumaza, Bruno Andrieu, Sabine Demotes-Mainard, Patrick Favre, et al.. Vers un rosier virtuel en 3D pour intégrer les interactions plante-environnement : génotype dans la mise en place de l’architecture. Plantes et Peuplements Virtuels (PLANTVIRT 2008), Mar 2008, Lyon, France. 2008. 〈hal-01192422〉
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2007

Journal articles

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J.B. Evers, Jan Vos, Michaël Chelle, Bruno Andrieu, Christian Fournier, et al.. Simulating the effects of localized red : far-red ratio on tillering in spring wheat (Triticum aestivum) using a three-dimensional virtual plant model. New Phytologist, Wiley, 2007, 176 (2), pp.325-336. 〈10.1111/j.1469-8137.2007.02168.x〉. 〈hal-01191979〉
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C.J. Birch, Bruno Andrieu, Christian Fournier, C. Kroesen. Kinetics of leaf extension in maize: Parameterization for two tropically adapted cultivars planted on two dates at Gatton. European Journal of Agronomy, Elsevier, 2007, 27 (2-4), pp.215-224. 〈10.1016/j.eja.2007.04.003〉. 〈hal-01191961〉
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Jochem Evers, Jan Vos, Christian Fournier, Bruno Andrieu, Michaël Chelle, et al.. An architectural model of spring wheat: Evaluation of the effects of population density and shading on model parameterization and performance. Ecological Modelling, Elsevier, 2007, 200 (3-4), pp.308-320. 〈10.1016/j.ecolmodel.2006.07.042〉. 〈hal-01191976〉
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Conference papers

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Michaël Chelle, J.B. Evers, Christian Fournier, Didier Combes, J. Vos, et al.. Simulating the red:far-red ratio of individual plant organs, a key issue for hytochrome-driven processes. 5.International Workshop, Nov 2007, Napier, New Zealand. 2007. 〈hal-01191975〉
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Corinne Robert, Christian Fournier, Bruno Andrieu, Bertrand Ney. Coupling 3D virtual plant and foliar epidemic models: a new modelling approach to investigate plant-pathogen interactions linked to architecture. 5. International Workshop, Nov 2007, Napier, New Zealand. 2007. 〈hal-01191938〉
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Jonathan Hillier, Jillian Watt, Jessica Bertheloot, Phillip Lewis, Christian Fournier, et al.. Modelling the time course of senescence in winter wheat at the individual leaf and whole plant level. 5. International Workshop, Nov 2007, Napier, France. 2007. 〈hal-01191954〉
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Christian Fournier, Bruno Andrieu. A simple model simulating the construction of blade and sheath length in maize. 5. International Workshop, Nov 2007, Napier, New Zealand. 2007. 〈hal-01191916〉
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Jessica Bertheloot, Bruno Andrieu, Christian Fournier, Pierre Martres. A model of nitrogen distribution and senescence in virtual wheat. 5.International Workshop, Nov 2007, Napier, New Zealand. 2007. 〈hal-01191963〉
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Samuel Dufour-Kowalski, Christophe Pradal, Nicolas Dones, Pierre Barbier de Reuille, Frédéric Boudon, et al.. OpenAlea: An open-source platform for the integration of heterogeneous FSPM components. FSPM07 – 5th International Workshop on Functional-Structural Plant Models, Nov 2007, Napier, New Zealand. pp.P36:1-2, 2007. 〈hal-00831824〉
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https://hal.inria.fr/hal-00831824/file/openalea-abstractfspm.pdf BibTex
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Patrick Favre, Gaëlle Gueritaine, Bruno Andrieu, Rachid Boumaza, Sabine Demotes-Mainard, et al.. Modelling the architectural growth and development of rosebush using L-Systems. growth phenotyping and imagint in plants, Jul 2007, Montpellier, France. 2007. 〈hal-01192410〉
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Gaëlle Gueritaine, Patrick Favre, Bruno Andrieu, Rachid Boumaza, Sabine Demotes-Mainard, et al.. Growth kinetics and architectural development of the rose bush according to thermal time. growth phenotyping and imagint in plants, Jul 2007, Montpellier, France. 2007. 〈hal-01192420〉
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Book sections

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Karine Chenu, Christian Fournier, Bruno Andrieu, Catherine Giauffret. An architectural approach to investigate maize response to low temperature. Scale and complexity in plant systems research: Gene-plant-crop relations, Springer, 2007, 978-1-4020-5904-9. 〈hal-01192011〉
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J. Vos, Michaël Chelle, T. Dejong, Christian Fournier, P.C. Struik, et al.. Functional-structural plant models in crop production: where are we and where to go?. Functional-Structural Plant Modelling in Crop Production, Springer, 2007, 978-1-4020-6032-8. 〈hal-01191949〉
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Christian Fournier, Bruno Andrieu, Gerhard Buck-Sorlin, J.B. Evers, Jean-Louis Drouet, et al.. Functional-structural modelling of Gramineae. Functional-Structural Plant Modelling in Crop Production, Springer, 2007, 978-1-4020-6033-5. 〈hal-01191932〉
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Directions of work or proceedings

ref_biblio
Samuel Dufour-Kowalski, Christophoe Pradal, Nicolas Dones, Pierre Barbier de Reuille, Frédéric Boudon, et al.. OpenAlea: an open-source platform for the integration of heterogeneous FSPM components. 5. International Workshop on Functional-Structural Plant Models, 2007, Napier, New Zealand. pp.36, 2007. 〈hal-01189279〉
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2006

Conference papers

ref_biblio
Christophe Pradal, Frédéric Boudon, Nicolas Dones, Jean-Baptiste Durand, Pierre Barbier de Reuille, et al.. OpenAlea : a platform for plant modelling, analysis and simulation. Python Conference Europython, 2006, Genève, Switzerland. 16 p., 2006. 〈hal-01189325〉
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2001

Conference papers

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Christian Fournier, Bruno Andrieu, Yassine Sohbi. VIRTUAL PLANT MODELS FOR STUDYING INTERACTIONS BETWEEN CROPS AND ENVIRONMENT. Simulation in industry, ESS’2001, Oct 2001, Marseille, France. Simulation in industry – ESS 2001, Proc. of the 13th European Simulation Symposium, 2001. 〈hal-01316844〉
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https://hal.archives-ouvertes.fr/hal-01316844/file/ArticleSend.pdf BibTex

2000

Theses

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Christian Fournier. Modélisation des interactions entre plantes au sein des peuplements. Application à la simulation des régulations de la morphogenèse aérienne du maïs (Zea mays L.) par la compétition pour la lumière.. Ecologie, Environnement. Institut national agronomique paris-grignon – INA P-G, 2000. Français. 〈tel-00003247〉
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1999

Journal articles

ref_biblio
Christian Fournier, Bruno Andrieu. ADEL-maize: an L-system based model for the integration of growth processes from the organ to the canopy. Application to regulation of morphogenesis by light availability. Agronomie, EDP Sciences, 1999, 19 (3-4), pp.313-327. 〈hal-00885933〉
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https://hal.archives-ouvertes.fr/hal-00885933/file/hal-00885933.pdf BibTex

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