Permanent link to this article: https://team.inria.fr/genscale/high-throughput-sequence-analysis/
Description Compareads is the first version of a fast software for comparing two sets of metagenomics data. The output is a score of similarity. Each set may include hundreds of millions reads. Commet is the next version allowing multiple sets of metagenomic to be combined together. The output is a matrix of scores. Web Site …
Description PLAST (Parallel Local Alignment Search Tool) is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations (5x-50x) of seeds-based heuristic comparison methods, such as the Blast suite of algorithms, still providing high quality results. Relying on unique software architecture, PLAST takes full advantage of recent multi-core personal computers without …
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