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The package Cassis implements methods for precise detection of rearrangement breakpoints in a sequenced genome by comparison with a genome of a related species.


C. Lemaitre, E. Tannier, C. Gautier, M.-F. Sagot, Precise detection of rearrangement breakpoints in mammalian genomes, BMC Bioinformatics, 2008, 9(1):286.

C. Baudet, C. Lemaitre, D. Zanoni, C. Gautier, E. Tannier, M.-F. Sagot, Cassis: detection of genomic rearrangement breakpoints, Bioinformatics, 2010, 26(15):1897-1898.

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