Software

 

  • VALIDICLUST an R package to perform VALID Inference for CLUsters Separation Testing in low dimension. Available on CRAN, development version on GitHub.
  • crossurr an R package to perform Doubly robust surrogate marker evaluation via cross-fitting. Available on CRAN, development version on GitHub.
  • ccdf an R package to perform single-cell RNA-seq ditribution-free differnetial analysis. Available on CRAN, development version on GitHub.
  • dearseq an R package to perform robust gene-wise analysis of RNA-seq data. Available on Bioconductor, development version available on GitHub.
  • tcgsaseq an R package to perform gene set analysis of longitudinal RNA-seq data with variance component score test, accounting for data heteroscedasticity through precision weights. Archived on CRAN (superseeded by dearseq), available on GitHub.