Former Members
Research Scientists Tom Dreyfus PhD student, 2008-2011. Julie Bernauer Assistant researcher, 2007-2009. Now research scientist with the INRIA AMIB group, INRIA Saclay. Sébastien Loriot PhD student and Post-doc fellow, 2007-2009. Now with the Geometry Factory. Benjamin Bouvier Post-doc fellow, 2006-2008. Administrative Assistants Caroline French Project Assistant, 2009-2011. Agnès Bessière Project Assistant, 2007-2009. Summer Interns Pararth …
Homepage – Frédéric CAZALS
Frédéric CAZALS INRIA Sophia Antipolis – Mediterranée 2004, route des Lucioles – BP93 06902 Sophia Antipolis E-mail: Frederic.Cazals@inria.fr Telephone: +33.4.92.38.71.88 Links Publications Vitae Teaching Geometric and Topological Modeling, with Applications in Biophysics and Structural Biology ; Ecole Centrale Paris, 3rd year, applied mathematics. Algorithmic Problems in Computational Structural Biology; Master of Science in Computational Biology, …
Homepage – Nelly BESSEGA
Nelly BESSEGA INRIA Sophia Antipolis – Mediterranée 2004, route des Lucioles – BP93 06902 Sophia Antipolis E-mail: Nelly.Bessega@inria.fr Telephone: +33.4.92.38.50.56
Homepage – Noël MALOD-DOGNIN
Noël MALOD-DOGNIN INRIA Sophia Antipolis – Mediterranée 2004, route des Lucioles – BP93 06902 Sophia Antipolis E-mail: Noel.Malod-dognin@inria.fr Telephone: +33 4 92 38 75 63 Interests Protein 3D structure related problems (comparison, folding, docking) Combinatorial optimisation and graph algorithms Integer programming and Lagrangian relaxation Softwares CSA; Comparative Structural Alignment is a web server for the …
Homepage – Christine ROTH
Christine ROTH INRIA Sophia Antipolis – Mediterranée 2004, route des Lucioles – BP93 06902 Sophia Antipolis E-mail: christine.roth@inria.fr Telephone: +33.4.92.38.50.53 Thesis Title: Modeling the flexibility of macro-molecules: theory and applications. Key words molecular dynamics, normal modes analysis, dimensionality reduction techniques, topological persistence.
Homepage – Alix LHERITIER
Alix LHERITIER INRIA Sophia Antipolis – Mediterranée 2004, route des Lucioles – BP93 06902 Sophia Antipolis E-mail: Alix.Lheritier@inria.fr Telephone: +33.4.92.38.79.73 Thesis Subject: Scoring and discriminating in high-dimensional spaces: a geometric based approach of statistical tests. Key words dimensionality reduction, non-manifold learning, statistical tests, supervised learning; docking and scoring.
Homepage – Deepesh AGARWAL
Deepesh AGARWAL INRIA Sophia Antipolis – Mediterranée 2004, route des Lucioles – BP93 06902 Sophia Antipolis E-mail: Deepesh.Agarwal@inria.fr Telephone: +33.4.92.38.50.53 Thesis Title: Towards nano-molecular design: advanced algorithms for modeling large protein assemblies. Key words protein assembly, reconstruction, mass spectrometry, tandem affinity purification, contact inference; fuzzy models, optimization. Linkedin page http://fr.linkedin.com/pub/deepesh-agarwal/10/b46/353